RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 DHDDSQ86SQ9 333 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 ZC3HC1Q86WB0 502 aaKnown RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 DAW1Q8N136 415 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 ZSCAN4Q8NAM6 433 aaPredicted RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 OR9Q2Q8NGE9 314 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 OR1L6Q8NGR2 347 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 OR52E5Q8NH55 327 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 OR10A6Q8NH74 314 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 LNX1Q8TBB1 728 aaPredicted RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 SDR42E1Q8WUS8 393 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 TNFAIP8L1Q8WVP5 186 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 RGP1Q92546 391 aaPredicted RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 RAB3CQ96E17 227 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 YIPF6Q96EC8 236 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 WDR34Q96EX3 536 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 HIST1H2AAQ96QV6 131 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 SEBOXQ9HB31 216 aaPredicted RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 TMEM27Q9HBJ8 222 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 GALNT9Q9HCQ5 603 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 AGPAT4Q9NRZ5 378 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 RLIMQ9NVW2 624 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 NLE1Q9NVX2 485 aaPredicted RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 C2orf42Q9NWW7 574 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 COPZ2Q9P299 210 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 MRPS28Q9Y2Q9 187 aaKnown RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 PCM1Q15154 2024 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 MUC6Q6W4X9 2439 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 YLPM1P49750 1951 aaKnown RBP4.82□□□□□ -1.64
VPS41-209ENST00000457055 SCN9AQ15858 1988 aa4.82□□□□□ -1.64
VPS41-209ENST00000457055 TONSLQ96HA7 1378 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ADGRA2Q96PE1 1338 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ARHGEF17Q96PE2 2063 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 SCN7AQ01118 1682 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 DOCK3Q8IZD9 2030 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR6C68A6NDL8 312 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 MYADML2A6NDP7 307 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR6C6A6NF89 314 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 SHISA7A6NL88 538 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 NPIPB5A8MRT5 1133 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 EFCAB9A8MZ26 197 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 HACD1B0YJ81 288 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 I3L4J1 428 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 SLC31A1O15431 190 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 PRAF2O60831 178 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR2B3O76000 313 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 GH2P01242 217 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 IFNW1P05000 195 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 BPGMP07738 259 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 FCER1AP12319 257 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ETFAP13804 333 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 GABRA1P14867 456 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 MUC1P15941 1255 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 EDN2P20800 178 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 BCKDHBP21953 392 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CXCR1P25024 350 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 GDF1P27539 372 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 VHLP40337 213 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CD200P41217 278 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 DNASE1L1P49184 302 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 WNT4P56705 351 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 RPL26P61254 145 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 RAP1AP62834 184 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 RAE1P78406 368 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 DLK1P80370 383 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ACVR1Q04771 509 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 SKP2Q13309 424 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR8G1Q15617 311 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ARHGAP11BQ3KRB8 267 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 MGAT5BQ3V5L5 792 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 DCAF10Q5QP82 559 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 TIMM23BQ5SRD1 257 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OTUD3Q5T2D3 398 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 NSUN5P2Q63ZY6 315 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CAPN13Q6MZZ7 669 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 MOB3CQ70IA8 216 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CYS1Q717R9 158 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 TCF24Q7RTU0 167 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 NUFIP2Q7Z417 695 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 MARCH9Q86YJ5 346 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 RAB43Q86YS6 212 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 EIF4E3Q8N5X7 224 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR52N4Q8NGI2 321 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR5L2Q8NGL0 311 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR52I2Q8NH67 350 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ITFG1Q8TB96 612 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 MAPK15Q8TD08 544 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 SKA2Q8WVK7 121 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 NPIPB3Q92617 1050 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 GHSRQ92847 366 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 LGALS12Q96DT0 336 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 TRMT61AQ96FX7 289 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 GPR137Q96N19 417 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ALKBH3Q96Q83 286 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 KLF6Q99612 283 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 MESP1Q9BRJ9 268 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CCDC32Q9BV29 185 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 NUDT9Q9BW91 350 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 SLC39A8Q9C0K1 460 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 LAT2Q9GZY6 243 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 C11orf54Q9H0W9 315 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms