RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FXYD1O00168 92 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 OR7A17O14581 309 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TFECO14948 347 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 TAPBPO15533 448 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 PPIHO43447 177 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 LCMT2O60294 686 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 TPST2O60704 377 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 EEDO75530 441 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 SCGNO76038 276 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SLC25A14O95258 325 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 H6PDO95479 791 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 NUDT14O95848 222 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 OTCP00480 354 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SERPINA3P01011 423 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 RNF224P0DH78 156 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 HSD17B1P14061 328 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 FOSL2P15408 326 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 NELFEP18615 380 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 CD9P21926 228 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 UGT1A4P22310 534 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 RPS3P23396 243 aaKnown RBP eCLIP3.39□□□□□ -1.874e-6■■■■□ 22.8
VPS29-202ENST00000447578 FASP25445 335 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 GABRR2P28476 465 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 IL12AP29459 219 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 PPP2R1BP30154 601 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 OXTRP30559 389 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 UGT1A3P35503 534 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 UGT1A5P35504 534 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 HMGCLP35914 325 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SPAM1P38567 509 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 MRPL19P49406 292 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 STK19P49842 368 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 EMDP50402 254 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 GNB1P62873 340 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SEMG2Q02383 582 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 EMX2Q04743 252 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 APOFQ13790 326 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 RCAN2Q14206 197 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 CHRNA6Q15825 494 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ATP6AP1Q15904 470 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 IMPG1Q17R60 797 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 GGTA1PQ4G0N0 100 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 CYBRD1Q53TN4 286 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 WDR25Q64LD2 544 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 TPGS1Q6ZTW0 290 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SNX20Q7Z614 316 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TMCO2Q7Z6W1 182 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 ANKRD37Q7Z713 158 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TMEM150AQ86TG1 271 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TMEM17Q86X19 198 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 RALGPS2Q86X27 583 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 CARM1Q86X55 608 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ZFAND4Q86XD8 727 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 BBS7Q8IWZ6 715 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TMEM123Q8N131 208 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 CBR4Q8N4T8 237 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TRIML2Q8N7C3 387 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ZNRF1Q8ND25 227 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 OR1B1Q8NGR6 318 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 NANPQ8TBE9 248 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 PIH1D2Q8WWB5 315 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 MRPS31Q92665 395 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 DGCR14Q96DF8 476 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 DNAJA3Q96EY1 480 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SH3YL1Q96HL8 342 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 PPP3R2Q96LZ3 170 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 HBEGFQ99075 208 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 FAM173AQ9BQD7 235 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 C9orf16Q9BUW7 83 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 MAGT1Q9H0U3 335 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ADGRL4Q9HBW9 690 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 VCX3AQ9NNX9 186 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ARMC1Q9NVT9 282 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ELOVL2Q9NXB9 296 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 STOML2Q9UJZ1 356 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ZNF225Q9UK10 706 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 LSM7Q9UK45 103 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 CLEC4EQ9ULY5 219 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 MGAT4AQ9UM21 535 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 EXOGQ9Y2C4 368 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 EXOSC1Q9Y3B2 195 aaKnown RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 RNF11Q9Y3C5 154 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 FBXO7Q9Y3I1 522 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 OARD1Q9Y530 152 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 POLR3HQ9Y535 204 aaPredicted RBP3.39□□□□□ -1.87
VPS29-202ENST00000447578 OR51B4Q9Y5P0 310 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 COMMD3-BMI1R4GMX3 469 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 FRMPD3Q5JV73 1810 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 MYO16Q9Y6X6 1858 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 ZNF638Q14966 1978 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 TRAV19A0A0A6YYK7 116 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 IGHV3-38A0A0C4DH36 116 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 FAM240BA0A1B0GVZ2 78 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MFSD2BA6NFX1 497 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 LOC730098B7Z3J9 87 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 LSM1O15116 133 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 DFNA5O60443 496 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CRLF1O75462 422 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms