RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PRSS57Q6UWY2 283 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 RASSF6Q6ZTQ3 369 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 CCDC121Q6ZUS5 278 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 FOXL2NBQ6ZUU3 175 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 YTHDF3Q7Z739 585 aaKnown RBP9.92□□□□□ -0.82
COL28A1-203ENST00000435823 SLC30A7Q8NEW0 376 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 WFDC11Q8NEX6 87 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 FGFBP3Q8TAT2 258 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 GIPC3Q8TF64 312 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 CACNG6Q9BXT2 260 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 SYT4Q9H2B2 425 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 RERGLQ9H628 205 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 EGLN3Q9H6Z9 239 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 CDH20Q9HBT6 801 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 BARX1Q9HBU1 254 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-203ENST00000435823 TBC1D23Q9NUY8 699 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 VNN3Q9NY84 501 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 VSX1Q9NZR4 365 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-203ENST00000435823 PMF1-BGLAPU3KQ54 211 aa9.92□□□□□ -0.82
COL28A1-203ENST00000435823 PLCE1Q9P212 2302 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 C12orf71A8MTZ7 269 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 SLC16A7O60669 478 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 CST2P09228 141 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 MMP7P09237 267 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ZNF35P13682 527 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 CTLA4P16410 223 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ZNF32P17041 273 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 NR4A1P22736 598 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 LAP3P28838 519 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 APLNRP35414 380 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 SERPINF1P36955 418 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 CDKN2AP42771 156 aaKnown RBP9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ERFP50548 548 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ARHGDIAP52565 204 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 RPS23P62266 143 aaKnown RBP9.91□□□□□ -0.82
COL28A1-203ENST00000435823 SNRPD2P62316 118 aaKnown RBP9.91□□□□□ -0.82
COL28A1-203ENST00000435823 HGFACQ04756 655 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ETFDHQ16134 617 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 CLEC12AQ5QGZ9 265 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 LCE2AQ5TA79 106 aaPredicted RBP9.91□□□□□ -0.82
COL28A1-203ENST00000435823 C1orf146Q5VVC0 180 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 C11orf71Q6IPW1 123 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 KRT80Q6KB66 452 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 LEG1Q6P5S2 330 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 PTCHD4Q6ZW05 846 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ALDH16A1Q8IZ83 802 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 FBXO17Q96EF6 278 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 SNX18Q96RF0 628 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 WACQ9BTA9 647 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 DGCR6LQ9BY27 220 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ZNF442Q9H7R0 627 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 POLE4Q9NR33 117 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 TIMM10BQ9Y5J6 103 aa9.91□□□□□ -0.82
COL28A1-203ENST00000435823 ARID1AO14497 2285 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 ARRDC5A6NEK1 342 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 B9A039 149 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 EBAG9O00559 213 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 OR4A8P0C604 315 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 CD99P14209 185 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 HIST1H1CP16403 213 aaKnown RBP9.9□□□□□ -0.82
COL28A1-203ENST00000435823 THBS4P35443 961 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 CENPAP49450 140 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 COX10Q12887 443 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 RAB35Q15286 201 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 PABPC1L2AQ5JQF8 200 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 SYT9Q86SS6 491 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 KRTAP1-3Q8IUG1 177 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 ZNF584Q8IVC4 421 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 GLB1L2Q8IW92 636 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 PAPD5Q8NDF8 572 aaKnown RBP9.9□□□□□ -0.82
COL28A1-203ENST00000435823 OR2T33Q8NG76 320 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 OR4K13Q8NH42 304 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 Q96MF0 132 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 NMNAT3Q96T66 252 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 ZNF416Q9BWM5 594 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 NUAK2Q9H093 628 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 IL20Q9NYY1 176 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 PDP1Q9P0J1 537 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-203ENST00000435823 DNAJB9Q9UBS3 223 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 FBXO9Q9UK97 447 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-203ENST00000435823 BAIAP2Q9UQB8 552 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 COA3Q9Y2R0 106 aaPredicted RBP9.9□□□□□ -0.82
COL28A1-203ENST00000435823 POLR1DQ9Y2S0 133 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 CMAHPQ9Y471 501 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 ITPR3Q14573 2671 aa9.9□□□□□ -0.82
COL28A1-203ENST00000435823 MAP1AP78559 2803 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-203ENST00000435823 USF3Q68DE3 2245 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 H7C417 338 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 DEAF1O75398 565 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-203ENST00000435823 STOMP27105 288 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 GLRXP35754 106 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 GDI2P50395 445 aaKnown RBP9.89□□□□□ -0.83
COL28A1-203ENST00000435823 NUDT6P53370 316 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 PSG4Q00888 419 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.89□□□□□ -0.83
COL28A1-203ENST00000435823 SCRN3Q0VDG4 424 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 ENDOGQ14249 297 aaKnown RBP9.89□□□□□ -0.83
COL28A1-203ENST00000435823 EFNB3Q15768 340 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 ADIPOQQ15848 244 aa9.89□□□□□ -0.83
COL28A1-203ENST00000435823 SWI5Q1ZZU3 235 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms