RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 CCL2P13500 99 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 MSR1P21757 451 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 APOBEC3AP31941 199 aaPredicted RBP16.16■□□□□ 0.18
SHH-203ENST00000435425 PTH2RP49190 550 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHH-203ENST00000435425 DAG1Q14118 895 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 PABPC1L2AQ5JQF8 200 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 FAM27BQ5VT28 67 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 ZNF544Q6NX49 715 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 UGT2A3Q6UWM9 527 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 FOXL2NBQ6ZUU3 175 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.16■□□□□ 0.18
SHH-203ENST00000435425 AKR7LQ8NHP1 331 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 POLE4Q9NR33 117 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 CA10Q9NS85 328 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 ARMC1Q9NVT9 282 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 IL20Q9NYY1 176 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 FBXL3Q9UKT7 428 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 MYO9AB2RTY4 2548 aa16.16■□□□□ 0.18
SHH-203ENST00000435425 IDH3BO43837 385 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 MGRN1O60291 552 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 DEAF1O75398 565 aaPredicted RBP16.15■□□□□ 0.18
SHH-203ENST00000435425 MPZL1O95297 269 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 GPANK1O95872 356 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 CST2P09228 141 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 MMP7P09237 267 aaPredicted RBP16.15■□□□□ 0.18
SHH-203ENST00000435425 THBS4P35443 961 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 ARHGDIAP52565 204 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 GALK2Q01415 458 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 SNTB2Q13425 540 aaKnown RBP16.15■□□□□ 0.18
SHH-203ENST00000435425 DTX2Q86UW9 622 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 SLC30A7Q8NEW0 376 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 ZNF416Q9BWM5 594 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 OR51B6Q9H340 312 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 CDH20Q9HBT6 801 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 RPRD1BQ9NQG5 326 aaKnown RBP16.15■□□□□ 0.18
SHH-203ENST00000435425 CBLN4Q9NTU7 201 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.15■□□□□ 0.18
SHH-203ENST00000435425 AP4S1Q9Y587 144 aa16.15■□□□□ 0.18
SHH-203ENST00000435425 FAM171A2A8MVW0 826 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 H3BN98 237 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 DCTN6O00399 190 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 BHLHE40O14503 412 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 TP53P04637 393 aaPredicted RBP16.14■□□□□ 0.17
SHH-203ENST00000435425 ZNF35P13682 527 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 CCNOP22674 350 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 APEX1P27695 318 aaKnown RBP16.14■□□□□ 0.17
SHH-203ENST00000435425 POU1F1P28069 291 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 CRABP1P29762 137 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 ATP5J2P56134 94 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 ENDOGQ14249 297 aaKnown RBP16.14■□□□□ 0.17
SHH-203ENST00000435425 DNM1P34Q6PK57 102 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 GLB1L2Q8IW92 636 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 LRRC75A-AS1Q8N1F1 130 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 CYB561A3Q8NBI2 242 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 OR4Q3Q8NH05 313 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 TEX47Q8TBZ9 253 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 CACNG6Q9BXT2 260 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 ZNF556Q9HAH1 456 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 NTN4Q9HB63 628 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 B9D1Q9UPM9 204 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 SPEF1Q9Y4P9 236 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 CCDC168Q8NDH2 2452 aa16.14■□□□□ 0.17
SHH-203ENST00000435425 OR6C68A6NDL8 312 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 ARRDC5A6NEK1 342 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 C12orf71A8MTZ7 269 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 OVOL3O00110 214 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 PTHP01270 115 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 OR4A8P0C604 315 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 NR4A1P22736 598 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 APLNRP35414 380 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 PCBD1P61457 104 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 ADAM8P78325 824 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 PSG4Q00888 419 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 COX10Q12887 443 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 TBC1D28Q2M2D7 210 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 SLC36A3Q495N2 470 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 Q5PR19 223 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 SPNS3Q6ZMD2 512 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 AMIGO2Q86SJ2 522 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 OR6V1Q8N148 313 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 IQCF1Q8N6M8 205 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 ATG16L2Q8NAA4 619 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 CPEB3Q8NE35 698 aaKnown RBP16.13■□□□□ 0.17
SHH-203ENST00000435425 NUP37Q8NFH4 326 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 C11orf40Q8WZ69 217 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 TRMT61AQ96FX7 289 aaKnown RBP16.13■□□□□ 0.17
SHH-203ENST00000435425 GSX2Q9BZM3 304 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 OR2H1Q9GZK4 316 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 REV1Q9UBZ9 1251 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 TIMM10BQ9Y5J6 103 aa16.13■□□□□ 0.17
SHH-203ENST00000435425 PLCE1Q9P212 2302 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 VSTM5A8MXK1 200 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 TMCC2O75069 709 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 NDUFS7O75251 213 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 FAM157BP0CG42 384 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 ANXA8P13928 327 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 FASP25445 335 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 SERPINF1P36955 418 aa16.12■□□□□ 0.17
SHH-203ENST00000435425 KPNB1Q14974 876 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms