RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GGNBP1Q5YKI7 109 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NANOGP8Q6NSW7 305 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CBLN3Q6UW01 205 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 C3P1Q6ZMU1 363 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OLIG3Q7RTU3 272 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF550Q7Z398 422 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NET1Q7Z628 596 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PIGWQ7Z7B1 504 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SNX32Q86XE0 403 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GRAMD2AQ8IUY3 354 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MARVELD2Q8N4S9 558 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FAM71CQ8NEG0 241 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR8J3Q8NGG0 315 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PNPT1Q8TCS8 783 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC35B4Q969S0 331 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LRRC58Q96CX6 371 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM19Q96HH6 336 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SH3YL1Q96HL8 342 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZFP3Q96NJ6 502 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF607Q96SK3 696 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TUBA1CQ9BQE3 449 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CSTL1Q9H114 145 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PLK3Q9H4B4 646 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NANOGQ9H9S0 305 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 EFCAB1Q9HAE3 211 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF556Q9HAH1 456 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CHST11Q9NPF2 352 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 KCNJ16Q9NPI9 418 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ACER3Q9NUN7 267 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 C1RLQ9NZP8 487 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF629Q9UEG4 869 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RPS6KA6Q9UK32 745 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RNF6Q9Y252 685 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 VDAC3Q9Y277 283 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ARL2BPQ9Y2Y0 163 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 L3MBTL1Q9Y468 752 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF175Q9Y473 711 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 DSPPQ9NZW4 1301 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NINQ8N4C6 2090 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZGRF1Q86YA3 2104 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SAA2-SAA4A0A096LPE2 208 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 A0A0J9YW62 118 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CFAP73A6NFT4 308 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 C17orf51A8MQB3 221 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 M0QX08 132 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 VCYO14598 125 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 EFNA2O43921 213 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TOXO94900 526 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SYNGR4O95473 234 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 IFNA14P01570 189 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 BCHEP06276 602 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PABPC4LP0CB38 370 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 UBTFL6P0CB48 400 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 COX4I1P13073 169 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OPRM1P35372 400 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GZMMP51124 257 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CCR4P51679 360 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SUCLG1P53597 346 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CLDN15P56746 228 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CARD18P57730 90 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SRYQ05066 204 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SCARB2Q14108 478 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 VEZF1Q14119 521 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TOMM34Q15785 309 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SGCBQ16585 318 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NDUFAF6Q330K2 333 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF718Q3SXZ3 478 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM176BQ3YBM2 270 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF311Q5JNZ3 666 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 DCST1Q5T197 706 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MRPL2Q5T653 305 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FAM91A1Q658Y4 838 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 REP15Q6BDI9 236 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR2A2Q6IF42 318 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ERICH5Q6P6B1 374 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 DHRS4L2Q6PKH6 230 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 HACD2Q6Y1H2 254 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GRINAQ7Z429 371 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ARPINQ7Z6K5 226 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CALHM3Q86XJ0 350 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 VRK2Q86Y07 508 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 EPHX4Q8IUS5 362 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CCDC71Q8IV32 467 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RPRMLQ8N4K4 120 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TMCO5AQ8N6Q1 288 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 POC5Q8NA72 575 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR5M1Q8NGP8 315 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR2V1Q8NHB1 315 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF563Q8TA94 476 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CA5BP1Q8WTZ4 195 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OSTF1Q92882 214 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CMTM5Q96DZ9 223 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RNF145Q96MT1 663 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 HOPXQ9BPY8 73 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ECSITQ9BQ95 431 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CENPOQ9BU64 300 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CCDC106Q9BWC9 280 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 IKZF5Q9H5V7 419 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 KAT8Q9H7Z6 458 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TIGARQ9NQ88 270 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms