RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CRYBA2P53672 197 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 PSG4Q00888 419 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 SRSF4Q08170 494 aaKnown RBP6.84□□□□□ -1.31
VIM-202ENST00000421459 BAMBIQ13145 260 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 ZNF718Q3SXZ3 478 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 SWT1Q5T5J6 900 aaKnown RBP6.84□□□□□ -1.31
VIM-202ENST00000421459 HIST3H2AQ7L7L0 130 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 NANOGNBQ7Z5D8 188 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 IGFN1Q86VF2 1251 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 ABHD4Q8TB40 342 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 KLF14Q8TD94 323 aaPredicted RBP6.84□□□□□ -1.31
VIM-202ENST00000421459 TMEM255BQ8WV15 326 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 HIST1H2ACQ93077 130 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 TLCD1Q96CP7 247 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 NMD3Q96D46 503 aaKnown RBP6.84□□□□□ -1.31
VIM-202ENST00000421459 ELMOD3Q96FG2 381 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 TIMD4Q96H15 378 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 SEPHS2Q99611 448 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 ZNF426Q9BUY5 554 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 WNT5BQ9H1J7 359 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 LRMDAQ9H2I8 198 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 UNKLQ9H9P5 680 aaKnown RBP6.84□□□□□ -1.31
VIM-202ENST00000421459 SIAEQ9HAT2 523 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 TMBIM4Q9HC24 238 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 CCNB1IP1Q9NPC3 277 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 KLHL21Q9UJP4 597 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 GMEB1Q9Y692 573 aa6.84□□□□□ -1.31
VIM-202ENST00000421459 MDFIC2A0A1B0GVS7 189 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 A0A1W2PRG6 482 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 OR7A10O76100 309 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 ZNF205O95201 554 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 GPANK1O95872 356 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 IGHV2-70P01814 119 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 OMGP23515 440 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 PRTN3P24158 256 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 LAP3P28838 519 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 GDI2P50395 445 aaKnown RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 ERFP50548 548 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 GZMMP51124 257 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 PPP1CBP62140 327 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 FOXL1Q12952 345 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 ZNF154Q13106 437 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 TOP3AQ13472 1001 aaPredicted RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 CYP51A1Q16850 503 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 TUSC1Q2TAM9 212 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 PDLIM3Q53GG5 364 aaPredicted RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 FAM209AQ5JX71 171 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 C10orf128Q5T292 105 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 ARMC4Q5T2S8 1044 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 MBNL2Q5VZF2 373 aaKnown RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 ZNF774Q6NX45 483 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 SLC25A47Q6Q0C1 308 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 SHISA2Q6UWI4 295 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 TREML4Q6UXN2 200 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 Q6ZR03 302 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 DOK3Q7L591 496 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 DHDDSQ86SQ9 333 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 TEX29Q8N6K0 151 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 C11orf65Q8NCR3 313 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 ST7LQ8TDW4 575 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 OR2H1Q9GZK4 316 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 C1orf198Q9H425 327 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 ZNF696Q9H7X3 374 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 NANOGQ9H9S0 305 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 NTN4Q9HB63 628 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 INIPQ9NRY2 104 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 FAM53CQ9NYF3 392 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 EIF3KQ9UBQ5 218 aaKnown RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 PURGQ9UJV8 347 aaKnown RBP6.83□□□□□ -1.32
VIM-202ENST00000421459 NUP50Q9UKX7 468 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 NPTNQ9Y639 398 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 AUP1Q9Y679 476 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 MGAM2Q2M2H8 2515 aa6.83□□□□□ -1.32
VIM-202ENST00000421459 IGHV3-64DA0A0J9YX35 117 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 PLSCR5A0PG75 271 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 H7C1C5 153 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MT-ND1P03886 318 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MT-ND5P03915 603 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 IGHV4-38-2P0DP08 117 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MDKP21741 143 aaPredicted RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 GATA3P23771 443 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 CD80P33681 288 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 OR1E2P47887 323 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 SLC6A9P48067 706 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 ZNF133P52736 654 aaPredicted RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 SLC18A1P54219 525 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 LCN6P62502 163 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MRPS34P82930 218 aaKnown RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 TNFAIP6P98066 277 aaPredicted RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 CD47Q08722 323 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 PSG7Q13046 419 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 PIN1Q13526 163 aaPredicted RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 ENDOGQ14249 297 aaKnown RBP6.82□□□□□ -1.32
VIM-202ENST00000421459 ZMYND11Q15326 602 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 SLC9A3R2Q15599 337 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MOGQ16653 247 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 MMEL1Q495T6 779 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 ARMCX4Q5H9R4 360 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 LEG1Q6P5S2 330 aa6.82□□□□□ -1.32
VIM-202ENST00000421459 RBMS3Q6XE24 437 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms