RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PLAUP00749 431 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 HRGP04196 525 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 PSMB1P20618 241 aaKnown RBP8.05□□□□□ -1.12
VPS53-203ENST00000401468 MPGP29372 298 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 CDKN2AP42771 156 aaKnown RBP8.05□□□□□ -1.12
VPS53-203ENST00000401468 CSNK1A1P48729 337 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 SLC25A1P53007 311 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 ADAM8P78325 824 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 ADARB1P78563 741 aaKnown RBP8.05□□□□□ -1.12
VPS53-203ENST00000401468 MYBPC1Q00872 1141 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 IL1RL1Q01638 556 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 CAMK2DQ13557 499 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 CLEC12AQ5QGZ9 265 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 SLC25A30Q5SVS4 291 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 PAMR1Q6UXH9 720 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 ABHD12BQ7Z5M8 362 aaPredicted RBP8.05□□□□□ -1.12
VPS53-203ENST00000401468 C1orf162Q8NEQ5 155 aaPredicted RBP8.05□□□□□ -1.12
VPS53-203ENST00000401468 LRRC46Q96FV0 321 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 MED18Q9BUE0 208 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 RACGAP1Q9H0H5 632 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 FN3KQ9H479 309 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 PLEKHF2Q9H8W4 249 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 GPR35Q9HC97 309 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 FAM118AQ9NWS6 357 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 GLTPQ9NZD2 209 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 KLHL21Q9UJP4 597 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 UGT2A1Q9Y4X1 527 aa8.05□□□□□ -1.12
VPS53-203ENST00000401468 IGLV1-36A0A0B4J1U3 117 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 IGKV1D-43A0A0B4J1Z2 117 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 OR6C68A6NDL8 312 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ZNF99A8MXY4 864 aaPredicted RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 H0YAE9 185 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 DCTN6O00399 190 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 SMAD7O15105 426 aaKnown RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 ARHGEF9O43307 516 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 SERPINI2O75830 405 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 RAF1P04049 648 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 HMGN1P05114 100 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ITGA5P08648 1049 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 GABRB1P18505 474 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 IGHV1-2P23083 117 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 GGT2P36268 569 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 SH3BGRP55822 239 aaPredicted RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 SORDQ00796 357 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS53-203ENST00000401468 LGALS3BPQ08380 585 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ITGADQ13349 1161 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 TOP3AQ13472 1001 aaPredicted RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 LRRC36Q1X8D7 754 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 SFRP5Q5T4F7 317 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 TMEM236Q5W0B7 351 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 STAC2Q6ZMT1 411 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 USP51Q70EK9 711 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 TGIF2LYQ8IUE0 185 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ZNF100Q8IYN0 542 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 IQCF1Q8N6M8 205 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ZNF433Q8N7K0 673 aaPredicted RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 SLC37A3Q8NCC5 494 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 TRUB1Q8WWH5 349 aaKnown RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 MCHR2Q969V1 340 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 MUS81Q96NY9 551 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 VCX3BQ9H321 246 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 NELFAQ9H3P2 528 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ASB6Q9NWX5 421 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 TAS2R16Q9NYV7 291 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 ORC6Q9Y5N6 252 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 FKBP7Q9Y680 259 aa8.04□□□□□ -1.12
VPS53-203ENST00000401468 NSD1Q96L73 2696 aaPredicted RBP8.04□□□□□ -1.12
VPS53-203ENST00000401468 LOC100130705A0A1B0GUX0 176 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 DEFB108AA8MXU0 73 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 ZNF587BE7ETH6 402 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 XKRYO14609 159 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 DHHO43323 396 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 PRKYO43930 277 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 SLC2A10O95528 541 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 IFNGP01579 166 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 QDPRP09417 244 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 CTLA4P16410 223 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 ZNF3P17036 446 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 CD53P19397 219 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 EPHA1P21709 976 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 SLC2A5P22732 501 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 POU1F1P28069 291 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 CRABP1P29762 137 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 UGT2B10P36537 528 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 CD79BP40259 229 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 VHLP40337 213 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 FOXG1P55316 489 aaPredicted RBP8.03□□□□□ -1.12
VPS53-203ENST00000401468 CLRN1P58418 232 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 SNRPGP62308 76 aaKnown RBP8.03□□□□□ -1.12
VPS53-203ENST00000401468 MRPS34P82930 218 aaKnown RBP8.03□□□□□ -1.12
VPS53-203ENST00000401468 ROR2Q01974 943 aaKnown RBP8.03□□□□□ -1.12
VPS53-203ENST00000401468 FMODQ06828 376 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 FAPQ12884 760 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 CRMP1Q14194 572 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 DAZAP2Q15038 168 aaPredicted RBP8.03□□□□□ -1.12
VPS53-203ENST00000401468 GABRA6Q16445 453 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 KCNMB1Q16558 191 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 DEFB113Q30KQ7 82 aa8.03□□□□□ -1.12
VPS53-203ENST00000401468 LINC01590Q5TEZ4 76 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms