RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KDM8Q8N371 416 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 CA5BP1Q8WTZ4 195 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 NINJ1Q92982 152 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 SLC38A2Q96QD8 506 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 NMNAT3Q96T66 252 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 TEAD3Q99594 435 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ACTR6Q9GZN1 396 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 NUAK2Q9H093 628 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 SLC22A31A6NKX4 558 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 C12orf71A8MTZ7 269 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 C11orf98E9PRG8 122 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 PLGP00747 810 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 SERPINA5P05154 406 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 CCL1P22362 96 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 VHLP40337 213 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 OPRL1P41146 370 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 CAPZA2P47755 286 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 NUDT6P53370 316 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 EGR3Q06889 387 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 LGALS3BPQ08380 585 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ECH1Q13011 328 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 CAMK2DQ13557 499 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 MBNL2Q5VZF2 373 aaKnown RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 LEG1Q6P5S2 330 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 VASH1Q7L8A9 365 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 NANOS1Q8WY41 292 aaKnown RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ADI1Q9BV57 179 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 OR2H1Q9GZK4 316 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 IGLV3-9A0A075B6K5 115 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 NKX2-6A6NCS4 301 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SAC3D1A6NKF1 404 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 A6NNC1 897 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 RIIAD1A6NNX1 92 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF254O75437 659 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SLC2A10O95528 541 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PTHP01270 115 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 ENTPD1P49961 510 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 GLO1Q04760 184 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 FAM27E3Q08E93 113 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PPP1R8Q12972 351 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 CXXC5Q7LFL8 322 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SHFQ7M4L6 423 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 MEX3DQ86XN8 651 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 CCDC54Q8NEL0 328 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 OR52E2Q8NGJ4 325 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 OTOSQ8NHW6 89 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 FGFBP3Q8TAT2 258 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 ASB17Q8WXJ9 295 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 C11orf40Q8WZ69 217 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 EMC6Q9BV81 110 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 TEX12Q9BXU0 123 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PLEKHF2Q9H8W4 249 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 CLN6Q9NWW5 311 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PCDHGB1Q9Y5G3 927 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 COMMD3-BMI1R4GMX3 469 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 POLEQ07864 2286 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 AKAP9Q99996 3911 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 IRGMA1A4Y4 181 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 OVOL3O00110 214 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 XKRYO14609 159 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PTBP3O95758 552 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 CD37P11049 281 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 ALOX5APP20292 161 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 BMP5P22003 454 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 TCEA1P23193 301 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PTAFRP25105 342 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 RAB40BQ12829 278 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 MRPL28Q13084 256 aaKnown RBP6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PPA1Q15181 289 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 TAB1Q15750 504 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 BEX5Q5H9J7 111 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 GPAT4Q86UL3 456 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 IGFN1Q86VF2 1251 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 JAZF1Q86VZ6 243 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 PLPP7Q8NBV4 271 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SETD9Q8NE22 299 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 OR4F15Q8NGB8 312 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 EME1Q96AY2 570 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 HDHD2Q9H0R4 259 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SYT4Q9H2B2 425 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 ISYNA1Q9NPH2 558 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 CLEC4AQ9UMR7 237 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 TIMM10BQ9Y5J6 103 aa6.09□□□□□ -1.43
LIMA1-202ENST00000394943 SPTBN2O15020 2390 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 CTAG2O75638 210 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 SULT1C4O75897 302 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 RPSAP08865 295 aaKnown RBP6.09□□□□□ -1.44
LIMA1-202ENST00000394943 CCDC159P0C7I6 412 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 POLR2IP36954 125 aaKnown RBP6.09□□□□□ -1.44
LIMA1-202ENST00000394943 GABARAPL2P60520 117 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 CDC42P60953 191 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 FMODQ06828 376 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 FAPQ12884 760 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 CDONQ4KMG0 1287 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 LSRQ86X29 649 aaPredicted RBP6.09□□□□□ -1.44
LIMA1-202ENST00000394943 C10orf53Q8N6V4 93 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 MAP6Q96JE9 813 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 CXXC4Q9H2H0 198 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 DUSP21Q9H596 190 aa6.09□□□□□ -1.44
LIMA1-202ENST00000394943 KIF17Q9P2E2 1029 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms