RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TMEM251Q8N6I4 163 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF431Q8TF32 576 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MOGAT1Q96PD6 335 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 WFDC6Q9BQY6 131 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 HDHD5Q9BXW7 423 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MMP25Q9NPA2 562 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 COA3Q9Y2R0 106 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ALG1L2C9J202 215 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SMLR1H3BR10 107 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SERPINA3P01011 423 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CD2P06729 351 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 HCKP08631 526 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CLUP10909 449 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 NR2C1P13056 603 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 UCNP55089 124 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 DSCR4P56555 118 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RRAS2P62070 204 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MLLT11Q13015 90 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF169Q14929 603 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 KLHL22Q53GT1 634 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MBOAT2Q6ZWT7 520 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF615Q8N8J6 731 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 TXNL4BQ9NX01 149 aaKnown RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GLTPQ9NZD2 209 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF224Q9NZL3 707 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 KLHL9Q9P2J3 617 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CKLFQ9UBR5 152 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 PRR14LQ5THK1 2151 aa9.27□□□□□ -0.92
COL6A3-205ENST00000392004 A0A0X1KG70 313 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 VSTM5A8MXK1 200 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 SLC43A1O75387 559 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 HOXB9P17482 250 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ATF4P18848 351 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 APEX1P27695 318 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 APOBEC1P41238 236 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 HTR5AP47898 357 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 DAP3P51398 398 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 CAPZA1P52907 286 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 PMPCAQ10713 525 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ECH1Q13011 328 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TNK1Q13470 666 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 OR4D11Q8NGI4 311 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF346Q9UL40 294 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ANKHD1Q8IWZ3 2542 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 SYT5O00445 386 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 DHFRP00374 187 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 PDGFAP04085 211 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 QDPRP09417 244 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 FAM157BP0CG42 384 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 CRYBB2P43320 205 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 FMODQ06828 376 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 CNIH2Q6PI25 160 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 CAMKMTQ7Z624 323 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF101Q8IZC7 436 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 LSMEM1Q8N8F7 131 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TRMT10AQ8TBZ6 339 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TAAR8Q969N4 342 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 C3orf49Q96BT1 292 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 UBL7Q96S82 380 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TTTY12Q9BZ98 90 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 B3GNT4Q9C0J1 378 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 PPIL3Q9H2H8 161 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 UBQLN3Q9H347 655 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 GPR27Q9NS67 375 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 DNAJB12Q9NXW2 375 aaKnown RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 POLQO75417 2590 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 MED19A0JLT2 244 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 GGT3PA6NGU5 568 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ZAR1LA6NP61 321 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 THBS1P07996 1170 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 OR8G3PP0DMU2 310 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 CNR1P21554 472 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 ZNF613Q6PF04 617 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 PHC2Q8IXK0 858 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TIGD4Q8IY51 512 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 KLHL36Q8N4N3 616 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 OR4C15Q8NGM1 316 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 OR2V1Q8NHB1 315 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 SPRYD4Q8WW59 207 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-205ENST00000392004 WACQ9BTA9 647 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 NARFLQ9H6Q4 476 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 TCF7L1Q9HCS4 588 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 NDUFB11Q9NX14 153 aa9.27□□□□□ -0.93
COL6A3-205ENST00000392004 JMJD1CQ15652 2540 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 FITM1A5D6W6 292 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ARFIP1P53367 373 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 FGFBP1Q14512 234 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 PGGHGQ32M88 737 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ALKBH6Q3KRA9 238 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 TOR2AQ5JU69 321 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 PGBD2Q6P3X8 592 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 BTN2A1Q7KYR7 527 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 HSD17B8Q92506 261 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 UFD1Q92890 307 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 SARGQ9BW04 601 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 PARPBPQ9NWS1 579 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ASH2LQ9UBL3 628 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 SLC5A6Q9Y289 635 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 A0A1B0GVI7 797 aa9.26□□□□□ -0.93
COL6A3-205ENST00000392004 ANXA2P2A6NMY6 339 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms