RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 LINC00346Q8IVM7 164 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 OR8H1Q8NGG4 311 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 OR4D10Q8NGI6 311 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 GON7Q9BXV9 100 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 CDCP1Q9H5V8 836 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM14AQ9Y6G1 99 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 CACNA1EQ15878 2313 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 TRBV11-1A0A0K0K1C0 115 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 ANXA2P2A6NMY6 339 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 GLSO94925 669 aaPredicted RBP11.99□□□□□ -0.49
CCDC3-202ENST00000378839 FCER2P06734 321 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 ANXA2P07355 339 aaKnown RBP11.99□□□□□ -0.49
CCDC3-202ENST00000378839 HEXBP07686 556 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 PTGS2P35354 604 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 RAD52P43351 418 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 SLC26A5P58743 744 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 RASGEF1BQ0VAM2 473 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 LINC00303Q3SY05 128 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 CD276Q5ZPR3 534 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 PLPP7Q8NBV4 271 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 STK35Q8TDR2 534 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 FCAMRQ8WWV6 532 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 ASB10Q8WXI3 467 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 HLA-CQ95604 372 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 MED30Q96HR3 178 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 MNTQ99583 582 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 TRAF4Q9BUZ4 470 aaPredicted RBP11.99□□□□□ -0.49
CCDC3-202ENST00000378839 COMMD4Q9H0A8 199 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 STEAP1Q9UHE8 339 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 GTF2A1LQ9UNN4 478 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 ANKUB1A6NFN9 424 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 I3L521 148 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SIGLEC6O43699 453 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ALOX12BO75342 701 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ALDOBP05062 364 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 MAPK3P27361 379 aaPredicted RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SQSTM1Q13501 440 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 CORO6Q6QEF8 472 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 NDUFAF7Q7L592 441 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 CATSPERDQ86XM0 798 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 OR5M1Q8NGP8 315 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 OR2I1PQ8NGU4 316 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 OR56B4Q8NH76 319 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ASB5Q8WWX0 329 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 C7orf50Q9BRJ6 194 aaKnown RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SEC22CQ9BRL7 303 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 EMC7Q9NPA0 242 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 MGAT4AQ9UM21 535 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SCRG1O75711 98 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 AHSA1O95433 338 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ANOS1P23352 680 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 CAMK2DQ13557 499 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 FAM166AQ6J272 317 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SLC18B1Q6NT16 456 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 PAPD4Q6PIY7 484 aaKnown RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 NHLRC1Q6VVB1 395 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SLC26A10Q8NG04 563 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 OR51A2Q8NGJ7 313 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 POC1BQ8TC44 478 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 RNF138Q8WVD3 245 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 TSEN15Q8WW01 171 aaKnown RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SLC25A28Q96A46 364 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 EMC6Q9BV81 110 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SLC7A5P2Q9GIP4 190 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 COPZ2Q9P299 210 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 H3BML4 177 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 TEX46H3BTG2 121 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ARPC1BO15143 372 aaKnown RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 NOS1APO75052 506 aaPredicted RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 CTAG2O75638 210 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 RAF1P04049 648 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 RAB40ALP0C0E4 278 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 KLK2P20151 261 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 EPHA8P29322 1005 aaPredicted RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 PUDPQ08623 228 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 RABEPKQ7Z6M1 372 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 ST7LQ8TDW4 575 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 RAB40AQ8WXH6 277 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 DACT3Q96B18 629 aaPredicted RBP11.98□□□□□ -0.49
CCDC3-202ENST00000378839 KCNK17Q96T54 332 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SPSB2Q99619 263 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 SLITRK2Q9H156 845 aa11.98□□□□□ -0.49
CCDC3-202ENST00000378839 MEIKINA0A087WXM9 373 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 MEIS3P1A6NDR6 274 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 KHDRBS3O75525 346 aaKnown RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 OR6A2O95222 327 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 ANXA7P20073 488 aaKnown RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 PSMB1P20618 241 aaKnown RBP11.97□□□□□ -0.49
CCDC3-202ENST00000378839 MAP2K6P52564 334 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 C2orf76Q3KRA6 126 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 OR10G3Q8NGC4 313 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 SAP25Q8TEE9 199 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 NXPE2Q96DL1 559 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 SHDQ96IW2 340 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 HYLS1Q96M11 299 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 HEXA-AS1Q9H8Q6 139 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 G6PC2Q9NQR9 355 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 DLL4Q9NR61 685 aa11.97□□□□□ -0.49
CCDC3-202ENST00000378839 OCIAD1Q9NX40 245 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms