RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KLF3P57682 345 aaPredicted RBP18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 PSG4Q00888 419 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 NKPD1Q17RQ9 610 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 ZBED5Q49AG3 693 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 RRM2BQ7LG56 351 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 RDH5Q92781 318 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 POM121L2Q96KW2 1035 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 NSRP1Q9H0G5 558 aaKnown RBP18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 CHODLQ9H9P2 273 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 SLCO1C1Q9NYB5 712 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 NDUFAF4Q9P032 175 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 GPR160Q9UJ42 338 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 TMEM5Q9Y2B1 443 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 A0A1W2PRQ8 180 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 NCR1O76036 304 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 TGFAP01135 160 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 H1F0P07305 194 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 CD14P08571 375 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF26P17031 533 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 ACHEP22303 614 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 IL2RGP31785 369 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 ERVK-25P63136 954 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 MRPS11P82912 194 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 DGCR6Q14129 220 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 TRIP10Q15642 601 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 AKR7LQ8NHP1 331 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 SNX18Q96RF0 628 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 OR2H1Q9GZK4 316 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 DCAF13Q9NV06 445 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 FAM32AQ9Y421 112 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 ATRQ13535 2644 aa18.57■□□□□ 0.56
CCDC28B-201ENST00000373602 LOC100509620A0A075B734 347 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 C17orf100A8MU93 164 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 RHCEP18577 417 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 CCNOP22674 350 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 RPL4P36578 427 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 WNT5AP41221 380 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 GUCA1AP43080 201 aaPredicted RBP18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 ALKBH6Q3KRA9 238 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 FAM120AOSQ5T036 256 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 CPLX4Q7Z7G2 160 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 OR1J1Q8NGS3 322 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 YIPF5Q969M3 257 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 C1orf159Q96HA4 380 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 FAM46AQ96IP4 442 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 C7orf34Q96L11 122 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 WNT5BQ9H1J7 359 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 HINT3Q9NQE9 182 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 ADA2Q9NZK5 511 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 GRHPRQ9UBQ7 328 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 SAMD4AQ9UPU9 718 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 ADAM18Q9Y3Q7 739 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 TIMM10BQ9Y5J6 103 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 DNHD1Q96M86 4753 aa18.56■□□□□ 0.56
CCDC28B-201ENST00000373602 A0A1W2PPL8 197 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 H7C1C5 153 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 PTP4A3O75365 173 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 GDI2P50395 445 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 PCBD1P61457 104 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 LCN6P62502 163 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 ENDOGQ14249 297 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 MOGQ16653 247 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 FAM122BQ7Z309 247 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF101Q8IZC7 436 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 RNF148Q8N7C7 305 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 FAM86B1Q8N7N1 296 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 ICA1LQ8NDH6 482 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 SPATA3Q8NHX4 192 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 SNX33Q8WV41 574 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 Q96M85 177 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 NDEL1Q9GZM8 345 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 GORASP2Q9H8Y8 452 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 SIGLEC7Q9Y286 467 aa18.55■□□□□ 0.56
CCDC28B-201ENST00000373602 C5orf49A4QMS7 147 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 AHCYL1O43865 530 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 GMNNO75496 209 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 IGHV3-13P01766 116 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 MSR1P21757 451 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 MAGEB1P43366 347 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 GPR6P46095 362 aaPredicted RBP18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 OMPP47874 163 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 LIMS1P48059 325 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 TMEM33P57088 247 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 PCGF3Q3KNV8 242 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 MESTQ5EB52 335 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 FGD3Q5JSP0 725 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 TMEM154Q6P9G4 183 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 SYT9Q86SS6 491 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 ALDH16A1Q8IZ83 802 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 LINC01356Q8N9X3 169 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 DHRS1Q96LJ7 313 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF416Q9BWM5 594 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 POLE4Q9NR33 117 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 ZNF275Q9NSD4 429 aaPredicted RBP18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 NKIRAS2Q9NYR9 191 aa18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 EIF3KQ9UBQ5 218 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-201ENST00000373602 TRBV4-1A0A0J9YWV2 114 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 XKRYO14609 159 aa18.53■□□□□ 0.56
CCDC28B-201ENST00000373602 ICMTO60725 284 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms