RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SFXN1Q9H9B4 322 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 NOP16Q9Y3C1 178 aaKnown RBP14.78□□□□□ -0.04
SDC4-201ENST00000372733 A0A1B0GTI1 187 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 A0A1B0GW55 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 KANTRA0A1W2PQU2 76 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 CD8AP01732 235 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L2P0CJ85 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L3P0CJ86 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L4P0CJ87 422 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L5P0CJ88 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L6P0CJ89 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4L7P0CJ90 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 TACR3P29371 465 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 AGTR1P30556 359 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 SLC17A1Q14916 467 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 TMEM240Q5SV17 173 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 GLYATL3Q5SZD4 288 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 GLT8D1Q68CQ7 371 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 TMEM225Q6GV28 225 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 LIN54Q6MZP7 749 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 MOB3CQ70IA8 216 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 OR2W3Q7Z3T1 314 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 TMEM229BQ8NBD8 167 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 OR10Z1Q8NGY1 313 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 PDCD10Q9BUL8 212 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DUX4Q9UBX2 424 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 EPHA6Q9UF33 1036 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 A0A0D9SG52 128 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 MELTFP08582 738 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 SPARCP09486 303 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 ZNF735P0CB33 412 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 CD34P28906 385 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 SSBP1Q04837 148 aaKnown RBP14.77□□□□□ -0.04
SDC4-201ENST00000372733 NKPD1Q17RQ9 610 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 MOGAT2Q3SYC2 334 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 EMC4Q5J8M3 183 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 C1QL3Q5VWW1 255 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 MDGA2Q7Z553 956 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 PARGQ86W56 976 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 ZNF615Q8N8J6 731 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 ZSCAN1Q8NBB4 408 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 OR51A2Q8NGJ7 313 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 SLC41A2Q96JW4 573 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 MNTQ99583 582 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 SLC17A5Q9NRA2 495 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 TNFSF18Q9UNG2 199 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 DHDHQ9UQ10 334 aa14.77□□□□□ -0.04
SDC4-201ENST00000372733 DOCK8Q8NF50 2099 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 LOC100509620A0A075B734 347 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 RNF222A6NCQ9 220 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 C5orf67F2Z3F1 127 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 BCL2L11O43521 198 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 HLA-AP01891 365 aaKnown RBP14.77□□□□□ -0.05
SDC4-201ENST00000372733 CNR1P21554 472 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 UBE2IP63279 158 aaKnown RBP14.77□□□□□ -0.05
SDC4-201ENST00000372733 TAF13Q15543 124 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 BPIFB2Q8N4F0 458 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 TMEM185AQ8NFB2 350 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 OR4S1Q8NGB4 309 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 OR13C8Q8NGS7 320 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 ZNF563Q8TA94 476 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 FGF14Q92915 247 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 SLC25A21Q9BQT8 299 aaPredicted RBP14.77□□□□□ -0.05
SDC4-201ENST00000372733 NKX6-2Q9C056 277 aaPredicted RBP14.77□□□□□ -0.05
SDC4-201ENST00000372733 MSRAQ9UJ68 235 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 KLK13Q9UKR3 277 aa14.77□□□□□ -0.05
SDC4-201ENST00000372733 KNL1Q8NG31 2342 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 CYB5AP00167 134 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 CLPSP04118 112 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 HTR2CP28335 458 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 DLSTP36957 453 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 IGLV3-21P80748 117 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 FUT7Q11130 342 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 SQSTM1Q13501 440 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 PARM1Q6UWI2 310 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 OOSP2Q86WS3 158 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 ZNF321PQ8N8H1 164 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 SLC6A7Q99884 636 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 SLC6A15Q9H2J7 730 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 CERS4Q9HA82 394 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 GPN3Q9UHW5 284 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 MRPS33Q9Y291 106 aaKnown RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 MRPS18BQ9Y676 258 aaKnown RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 ARID1BQ8NFD5 2236 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 TMEM235A6NFC5 223 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 ZNF736B4DX44 427 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 WISP1O95388 367 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 KLF8O95600 359 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 RAB3AP20336 220 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 HNRNPA2B1P22626 353 aaKnown RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 ATP1B3P54709 279 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 PDSS1Q5T2R2 415 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 C11orf87Q6NUJ2 197 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 CHRDL2Q6WN34 429 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 TMEM17Q86X19 198 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 FAM174AQ8TBP5 190 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 CCNL2Q96S94 520 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 DNTTIP1Q9H147 329 aa14.76□□□□□ -0.05
SDC4-201ENST00000372733 SAV1Q9H4B6 383 aaPredicted RBP14.76□□□□□ -0.05
SDC4-201ENST00000372733 UBQLN4Q9NRR5 601 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms