RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 STX18Q9P2W9 335 aaKnown RBP11.66□□□□□ -0.54
VPS29-201ENST00000360579 KLHL21Q9UJP4 597 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 LRCH1Q9Y2L9 728 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 ARHGAP32A7KAX9 2087 aa11.66□□□□□ -0.54
VPS29-201ENST00000360579 A0A1W2PRG6 482 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 MCIDASD6RGH6 385 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 F5H0A9 414 aaPredicted RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 UBDO15205 165 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 RGS16O15492 202 aaPredicted RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 ICMTO60725 284 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 GPANK1O95872 356 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 CRYBA1P05813 215 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 OMGP23515 440 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 SLC6A2P23975 617 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ARHGDIAP52565 204 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 PPP1CBP62140 327 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 MTX3Q5HYI7 312 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 C10orf128Q5T292 105 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 TTC33Q6PID6 262 aaPredicted RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 BRICD5Q6PL45 260 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ARL9Q6T311 187 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ALDH16A1Q8IZ83 802 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 MUC20Q8N307 709 aaPredicted RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 NOXO1Q8NFA2 376 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ABHD4Q8TB40 342 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 UPRTQ96BW1 309 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 THOC1Q96FV9 657 aaKnown RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 MAELQ96JY0 434 aaKnown RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 SAMD8Q96LT4 415 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ZNF347Q96SE7 839 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 SEPHS2Q99611 448 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 MCHR1Q99705 422 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 PKP2Q99959 881 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 MRPL13Q9BYD1 178 aaKnown RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 TMEM38AQ9H6F2 299 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 ELOVL3Q9HB03 270 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 THAP1Q9NVV9 213 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 PDP1Q9P0J1 537 aaPredicted RBP11.65□□□□□ -0.54
VPS29-201ENST00000360579 CORO2BQ9UQ03 480 aa11.65□□□□□ -0.54
VPS29-201ENST00000360579 GMNCA6NCL1 334 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 SURF4O15260 269 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 TIMM8AO60220 97 aaPredicted RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 TGDSO95455 350 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 PLATP00750 562 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 ASAH2BP0C7U1 165 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 IGHV4-38-2P0DP08 117 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 UMPSP11172 480 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 NR2C1P13056 603 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 ZNF32P17041 273 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 HOXB9P17482 250 aaPredicted RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 CD80P33681 288 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 MDH2P40926 338 aaKnown RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 DAP3P51398 398 aaKnown RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 RAG2P55895 527 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 SEC61A1P61619 476 aaKnown RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 CDK5R2Q13319 367 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 SCARB2Q14108 478 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 KRT71Q3SY84 523 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 TMEM255AQ5JRV8 349 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 OLFML2AQ68BL7 652 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 SLC2A7Q6PXP3 512 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 LIAT1Q6ZQX7 453 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 RFPL4BQ6ZWI9 263 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 NANOGNBQ7Z5D8 188 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 OR9I1Q8NGQ6 314 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 TAF15Q92804 592 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS29-201ENST00000360579 UBE2FQ969M7 185 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 MPP4Q96JB8 637 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 ARHGDIGQ99819 225 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 CITED1Q99966 193 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 PAIP2Q9BPZ3 127 aaKnown RBP11.64□□□□□ -0.55
VPS29-201ENST00000360579 SMURF2Q9HAU4 748 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 MSL2Q9HCI7 577 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 DCAF16Q9NXF7 216 aa11.64□□□□□ -0.55
VPS29-201ENST00000360579 LOC100509620A0A075B734 347 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 FAM181BA6NEQ2 426 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 SRRM5B3KS81 715 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 HOXA3O43365 443 aaPredicted RBP11.63□□□□□ -0.55
VPS29-201ENST00000360579 NDUFA7O95182 113 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 KITP10721 976 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 TUBG1P23258 451 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 BPIFB3P59826 476 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 PDCD1Q15116 288 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 ZMYND11Q15326 602 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 LRIF1Q5T3J3 769 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 KIR3DL3Q8N743 410 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 WFDC6Q9BQY6 131 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 SSBP3Q9BWW4 388 aaPredicted RBP11.63□□□□□ -0.55
VPS29-201ENST00000360579 PRDM13Q9H4Q3 707 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 KCNK9Q9NPC2 374 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 TUBG2Q9NRH3 451 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 MAN2C1Q9NTJ4 1040 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 SLC25A37Q9NYZ2 338 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 PPP1R3CQ9UQK1 317 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 ANGPT4Q9Y264 503 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 GMEB1Q9Y692 573 aa11.63□□□□□ -0.55
VPS29-201ENST00000360579 WNK1Q9H4A3 2382 aa11.62□□□□□ -0.55
VPS29-201ENST00000360579 IGHV3OR16-10A0A075B7F0 116 aa11.62□□□□□ -0.55
VPS29-201ENST00000360579 TRAV40A0A0B4J280 105 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms