RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 GPATCH2Q9NW75 528 aa13.54□□□□□ -0.24
COL17A1-201ENST00000353479 TMEM129A0AVI4 362 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 CD300LBA8K4G0 201 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SCGB2A1O75556 95 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 PIPP12273 146 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 ADH6P28332 368 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 LCN10Q6JVE6 187 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 OR2V1Q8NHB1 315 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 FNDC9Q8TBE3 224 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 FAM3DQ96BQ1 224 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GPR55Q9Y2T6 319 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 HDGFL3Q9Y3E1 203 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GMEB1Q9Y692 573 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SERTM1A2A2V5 107 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 PMS2P1A4D2B8 440 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SURF4O15260 269 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 CYCSP99999 105 aaKnown RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GLIPR1L1Q6UWM5 242 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 C16orf47Q6ZP98 133 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 ZFAND1Q8TCF1 268 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 STK35Q8TDR2 534 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 DCUN1D4Q92564 292 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 OR51J1Q9H342 316 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 PRAF2O60831 178 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 NKX2-5P52952 324 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 ZNF117Q03924 483 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 DOK3Q7L591 496 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 KIF18BQ86Y91 864 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 C11orf40Q8WZ69 217 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 ARHGDIGQ99819 225 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 FAM173AQ9BQD7 235 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 TMEM246Q9BRR3 403 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GREB1LQ9C091 1923 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 LOC107986453A0A1B0GWG9 222 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SSPNQ14714 243 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 MSRB3Q8IXL7 192 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GPR173Q9NS66 373 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 RP1L1Q8IWN7 2480 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 CCL4P13236 92 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 CLDN6P56747 220 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SLC35A2P78381 396 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 NKG7Q16617 165 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SOWAHCQ53LP3 525 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 NKAIN3Q8N8D7 197 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 OR11G2Q8NGC1 345 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 KTI12Q96EK9 354 aaPredicted RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 LRFN5Q96NI6 719 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 GNRHR2Q96P88 292 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 PRRX2Q99811 253 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 ZMAT3Q9HA38 289 aaKnown RBP13.53□□□□□ -0.24
COL17A1-201ENST00000353479 SLC25A19Q9HC21 320 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 B3GAT1Q9P2W7 334 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 PCDHGA5Q9Y5G8 931 aa13.53□□□□□ -0.24
COL17A1-201ENST00000353479 TSPAN4O14817 238 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 TOX3O15405 576 aaPredicted RBP13.52□□□□□ -0.24
COL17A1-201ENST00000353479 ZNF766Q5HY98 468 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 RHBDD2Q6NTF9 364 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 RNF165Q6ZSG1 346 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 VASH2Q86V25 355 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 ANGPTL5Q86XS5 388 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 OR5M9Q8NGP3 310 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 ZFP57Q9NU63 452 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 GNG12Q9UBI6 72 aa13.52□□□□□ -0.24
COL17A1-201ENST00000353479 C5orf49A4QMS7 147 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 ARRDC5A6NEK1 342 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 ACHEP22303 614 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 SNRPD2P62316 118 aaKnown RBP13.52□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF616Q08AN1 781 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 HACD4Q5VWC8 232 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 FAHD1Q6P587 224 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 COMTD1Q86VU5 262 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 FAM83FQ8NEG4 500 aaPredicted RBP13.52□□□□□ -0.25
COL17A1-201ENST00000353479 RNF170Q96K19 258 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 A0A1B0GV50 99 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 GREM1O60565 184 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 CPT2P23786 658 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 ACER2Q5QJU3 275 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 WDR74Q6RFH5 385 aaPredicted RBP13.52□□□□□ -0.25
COL17A1-201ENST00000353479 LYPD4Q6UWN0 246 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 SYT9Q86SS6 491 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 DNAJC5GQ8N7S2 189 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 OR6M1Q8NGM8 313 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 PPIL3Q9H2H8 161 aaKnown RBP13.52□□□□□ -0.25
COL17A1-201ENST00000353479 A4GNTQ9UNA3 340 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 ARPC5O15511 151 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 SOD1P00441 154 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 CT62P0C5K7 136 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 CLN3Q13286 438 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 TRILQ7L0X0 811 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 BEST4Q8NFU0 473 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 PPA2Q9H2U2 334 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 LHX9Q9NQ69 397 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 TAS2R3Q9NYW6 316 aa13.52□□□□□ -0.25
COL17A1-201ENST00000353479 EDDM3BP56851 147 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 PHYHIPQ92561 330 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 HYLS1Q96M11 299 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 TAS2R4Q9NYW5 299 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 MYOTQ9UBF9 498 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ING1Q9UK53 422 aaPredicted RBP13.51□□□□□ -0.25
COL17A1-201ENST00000353479 RGPD3A6NKT7 1758 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms