RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR5M11Q96RB7 305 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 EDEM2Q9BV94 578 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 TNFRSF19Q9NS68 423 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 PSMB3P49720 205 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 UBE2G1P62253 170 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 Q3ZCU0 254 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 VWA2Q5GFL6 755 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 KDM4DQ6B0I6 523 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 VASH2Q86V25 355 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 CELF2-AS1Q8N7Q2 184 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 SFT2D1Q8WV19 159 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 ZNRF4Q8WWF5 429 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 C11orf40Q8WZ69 217 aa11.59□□□□□ -0.55
SDC3-201ENST00000336798 GPR55Q9Y2T6 319 aaPredicted RBP11.59□□□□□ -0.55
SDC3-201ENST00000336798 A0A1B0GX78 115 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TCRBV3S1A0A5B6 114 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TMEM202A6NGA9 273 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TLCD2A6NGC4 264 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 ANKRD61A6NGH8 418 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 C4orf47A7E2U8 309 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 F6UZH7 168 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TBPP20226 339 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 PCSK6P29122 969 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 MAP2K6P52564 334 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 PPIAP62937 165 aaKnown RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 RBM45Q8IUH3 476 aaKnown RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 SEMA6DQ8NFY4 1073 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR10G3Q8NGC4 313 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 SPACA5Q96QH8 159 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TAS2R4Q9NYW5 299 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 CLEC2DQ9UHP7 191 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 A0A0D9SG52 128 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TCAPO15273 167 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 EIF1BO60739 113 aaKnown RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 RGS11O94810 467 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR5G3P0C626 314 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 CD1CP29017 333 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 IRS1P35568 1242 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 HTR4Q13639 388 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 CGB2Q6NT52 195 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 MED18Q9BUE0 208 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 C20orf27Q9GZN8 174 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 CYB5R1Q9UHQ9 305 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 PRRG2O14669 202 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 APEX1P27695 318 aaKnown RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 PHYHD1Q5SRE7 291 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 DEFB123Q8N688 67 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 SLC16A11Q8NCK7 471 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 FCRL1Q96LA6 429 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 MS4A8Q9BY19 250 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 ZCCHC4Q9H5U6 513 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 FABP7O15540 132 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TEKQ02763 1124 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR10K2Q6IF99 312 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 SLCO4C1Q6ZQN7 724 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR10R2Q8NGX6 335 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 Q96M85 177 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR52A5Q9H2C5 316 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 LRIT2A6NDA9 550 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 LAP3P28838 519 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 FOXC1Q12948 553 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TRMT12Q53H54 448 aaKnown RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 MFSD12Q6NUT3 480 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 DPY19L2P2Q6ZN68 376 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 OR51E1Q8TCB6 317 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 CA5BP1Q8WTZ4 195 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TMEM43Q9BTV4 400 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 NKX6-2Q9C056 277 aaPredicted RBP11.58□□□□□ -0.56
SDC3-201ENST00000336798 C20orf85Q9H1P6 137 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 SLC5A6Q9Y289 635 aa11.58□□□□□ -0.56
SDC3-201ENST00000336798 TNFSF11O14788 317 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 NAGAP17050 411 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 MDGA2Q7Z553 956 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 WFDC5Q8TCV5 224 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 KIRREL1Q96J84 757 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 FAM96BQ9Y3D0 163 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 MYH13Q9UKX3 1938 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 LPCAT3Q6P1A2 487 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 Q6ZRG5 221 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 TECTBQ96PL2 329 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 RTL8AQ9BWD3 113 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 LRP5LA4QPB2 252 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 CHEK1O14757 476 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 NME2P1O60361 137 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 MRPS14O60783 128 aaKnown RBP11.57□□□□□ -0.56
SDC3-201ENST00000336798 PAPLNO95428 1278 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 SRMP19623 302 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 ACKR3P25106 362 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 RAP2BP61225 183 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 GJC3Q8NFK1 279 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 OR2G3Q8NGZ4 309 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 SLC37A2Q8TED4 501 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 SMAP2Q8WU79 429 aaPredicted RBP11.57□□□□□ -0.56
SDC3-201ENST00000336798 FYTTD1Q96QD9 318 aaKnown RBP11.57□□□□□ -0.56
SDC3-201ENST00000336798 SARGQ9BW04 601 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 CHST8Q9H2A9 424 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 TAPBPO15533 448 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 HPNP05981 417 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 PCBP3P57721 371 aaKnown RBP11.57□□□□□ -0.56
SDC3-201ENST00000336798 SSX7Q7RTT5 188 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms