RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 FAM180AQ6UWF9 173 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 RHOUQ7L0Q8 258 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 FGD2Q7Z6J4 655 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 ST7LQ8TDW4 575 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 SMAP2Q8WU79 429 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 SNX33Q8WV41 574 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 WNT2BQ93097 391 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 C12orf43Q96C57 262 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PELI1Q96FA3 418 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 GMPPAQ96IJ6 420 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 OR8B4Q96RC9 309 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 COQ7Q99807 217 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PRRG4Q9BZD6 226 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 ULBP2Q9BZM5 246 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 NAA50Q9GZZ1 169 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PRORYQ9H606 182 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 B3GAT2Q9NPZ5 323 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 CYB5R1Q9UHQ9 305 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 MRM2Q9UI43 246 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 NOSIPQ9Y314 301 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 SF3B6Q9Y3B4 125 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 A0A1B0GTH9 108 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 METTL15A6NJ78 407 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 CD8B2A6NJW9 211 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 SLC22A1O15245 554 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 OGG1O15527 345 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 PLPP2O43688 288 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 TMCC2O75069 709 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 WISP2O76076 250 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 GPANK1O95872 356 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 TGM6O95932 706 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 TACSTD2P09758 323 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF823P16415 610 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 MSR1P21757 451 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 GABRA5P31644 462 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF84P51523 738 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 TDGF1P3P51864 188 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 HCCSP53701 268 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 OR12D2P58182 307 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 ACSF3Q4G176 576 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 DMKNQ6E0U4 476 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 FDX2Q6P4F2 183 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF627Q7L945 461 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 KLBQ86Z14 1044 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 OR52N5Q8NH56 324 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 NSMAFQ92636 917 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 RNF166Q96A37 237 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 NABP1Q96AH0 204 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 SLX1AQ9BQ83 275 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 WACQ9BTA9 647 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 SLCO5A1Q9H2Y9 848 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 NELFAQ9H3P2 528 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 CALHM2Q9HA72 323 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 ST6GALNAC2Q9UJ37 374 aa13.18□□□□□ -0.3
CCDC88C-202ENST00000334448 CCDC160A6NGH7 325 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 J3QLW9 94 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 MRPL33O75394 65 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF254O75437 659 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 UPK3AO75631 287 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 MPZL1O95297 269 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 KRT8P05787 483 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 HOXD4P09016 255 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 SPARCP09486 303 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 FAM87AP0C7U9 286 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF19P17023 458 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 NPR2P20594 1047 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 GADD45AP24522 165 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 PSMA1P25786 263 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 AGTR1P30556 359 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 GBX2P52951 348 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 CDK5R1Q15078 307 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 LIPKQ5VXJ0 399 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 NSUN5P2Q63ZY6 315 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 RPL22L1Q6P5R6 122 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 KCTD18Q6PI47 426 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 MCEMP1Q8IX19 187 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 TUSC5Q8IXB3 177 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF679Q8IYX0 411 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 GPR137CQ8N3F9 429 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 OR10H5Q8NGA6 315 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 RNF133Q8WVZ7 376 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 ABHD6Q9BV23 337 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 PTTG2Q9NZH5 202 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 STUB1Q9UNE7 303 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 LHFPL6Q9Y693 200 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 DNAJC13O75165 2243 aa13.17□□□□□ -0.3
CCDC88C-202ENST00000334448 TLN1Q9Y490 2541 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 ARPC4-TTLL3A0A0A6YYG9 625 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 A0A1W2PPL8 197 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 E9PI62 339 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 AIREO43918 545 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 WDR1O75083 606 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 GABRA1P14867 456 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 DCTDP32321 178 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 CRYBB2P43320 205 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 HIST1H3AP68431 136 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 SIRPAP78324 504 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 AQP6Q13520 282 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 TRAM1Q15629 374 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 MEP1BQ16820 701 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms