RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.01□□□□□ -0.172e-10■■■■□ 21.5
LSM1-201ENST00000311351 A0A1W2PPW3 197 aa14□□□□□ -0.17
LSM1-201ENST00000311351 SLC22A23A1A5C7 686 aa14□□□□□ -0.17
LSM1-201ENST00000311351 NDUFS8O00217 210 aa14□□□□□ -0.17
LSM1-201ENST00000311351 IMPA2O14732 288 aa14□□□□□ -0.17
LSM1-201ENST00000311351 PTP4A3O75365 173 aa14□□□□□ -0.17
LSM1-201ENST00000311351 NDUFB2O95178 105 aa14□□□□□ -0.17
LSM1-201ENST00000311351 SNAP29O95721 258 aa14□□□□□ -0.17
LSM1-201ENST00000311351 SCG5P05408 212 aa14□□□□□ -0.17
LSM1-201ENST00000311351 ERCC1P07992 297 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 DAOP14920 347 aa14□□□□□ -0.17
LSM1-201ENST00000311351 ZNF16P17020 682 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 ATP6V1B2P21281 511 aa14□□□□□ -0.17
LSM1-201ENST00000311351 USF1P22415 310 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 APLNRP35414 380 aa14□□□□□ -0.17
LSM1-201ENST00000311351 NR4A2P43354 598 aa14□□□□□ -0.17
LSM1-201ENST00000311351 EVX1P49640 407 aa14□□□□□ -0.17
LSM1-201ENST00000311351 MNAT1P51948 309 aa14□□□□□ -0.17
LSM1-201ENST00000311351 KRR1Q13601 381 aaKnown RBP14□□□□□ -0.17
LSM1-201ENST00000311351 ALKBH6Q3KRA9 238 aa14□□□□□ -0.17
LSM1-201ENST00000311351 FAM27BQ5VT28 67 aa14□□□□□ -0.17
LSM1-201ENST00000311351 RGS7BPQ6MZT1 257 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 CYP2R1Q6VVX0 501 aa14□□□□□ -0.17
LSM1-201ENST00000311351 PRIMA1Q86XR5 153 aa14□□□□□ -0.17
LSM1-201ENST00000311351 ICA1LQ8NDH6 482 aa14□□□□□ -0.17
LSM1-201ENST00000311351 FNDC8Q8TC99 324 aa14□□□□□ -0.17
LSM1-201ENST00000311351 NEU4Q8WWR8 484 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 BPESC1Q9GZL8 116 aa14□□□□□ -0.17
LSM1-201ENST00000311351 KCNN2Q9H2S1 579 aa14□□□□□ -0.17
LSM1-201ENST00000311351 MYOZ1Q9NP98 299 aaPredicted RBP14□□□□□ -0.17
LSM1-201ENST00000311351 EMC7Q9NPA0 242 aa14□□□□□ -0.17
LSM1-201ENST00000311351 NDE1Q9NXR1 346 aa14□□□□□ -0.17
LSM1-201ENST00000311351 ADAM21Q9UKJ8 722 aa14□□□□□ -0.17
LSM1-201ENST00000311351 IGHV4-61A0A0C4DH41 118 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 LOC390937A0A1W2PQ73 354 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 UNC119BA6NIH7 251 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 LYNX1G3V0Z9 82 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 XKRYO14609 159 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 TLX2O43763 284 aaPredicted RBP13.99□□□□□ -0.17
LSM1-201ENST00000311351 GADD45GO95257 159 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 STAMBPO95630 424 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 CLPTM1O96005 669 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 PTHP01270 115 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 FABP3P05413 133 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 LCKP06239 509 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 IGHV4-31P0DP07 118 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 LYNX1P0DP58 116 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 ITGA2P17301 1181 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 MSR1P21757 451 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 CCNOP22674 350 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 STOMP27105 288 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 PSG4Q00888 419 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 ENDOGQ14249 297 aaKnown RBP13.99□□□□□ -0.17
LSM1-201ENST00000311351 C6orf52Q5T4I8 152 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 OTPQ5XKR4 325 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 UGT2A3Q6UWM9 527 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 OR1J2Q8NGS2 313 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 MCUR1Q96AQ8 359 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 GPX7Q96SL4 187 aaPredicted RBP13.99□□□□□ -0.17
LSM1-201ENST00000311351 ZNF416Q9BWM5 594 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 OR2H1Q9GZK4 316 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 NDEL1Q9GZM8 345 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 WNT5BQ9H1J7 359 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 KRCC1Q9NPI7 259 aaPredicted RBP13.99□□□□□ -0.17
LSM1-201ENST00000311351 NRIP3Q9NQ35 241 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 POLE4Q9NR33 117 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 FAM53CQ9NYF3 392 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 REV1Q9UBZ9 1251 aa13.99□□□□□ -0.17
LSM1-201ENST00000311351 LOC100509620A0A075B734 347 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 PRSS37A4D1T9 235 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 B2RBV5 119 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 SOCS2O14508 198 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 CRLF1O75462 422 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 CST2P09228 141 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 NAT2P11245 290 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 CTLA4P16410 223 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 SDHAP31040 664 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 RRM2P31350 389 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 WNT5AP41221 380 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 UCP2P55851 309 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 GLO1Q04760 184 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 ZNF774Q6NX45 483 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 PTCHD4Q6ZW05 846 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 ZER1Q7Z7L7 766 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 ZNF101Q8IZC7 436 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 CCDC197Q8NCU1 140 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 FANK1Q8TC84 345 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 POM121L2Q96KW2 1035 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 SYT4Q9H2B2 425 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 LRMDAQ9H2I8 198 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 RERGLQ9H628 205 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 IER3IP1Q9Y5U9 82 aa13.98□□□□□ -0.17
LSM1-201ENST00000311351 C5orf49A4QMS7 147 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 A8MV72 311 aaPredicted RBP13.97□□□□□ -0.17
LSM1-201ENST00000311351 NCR1O76036 304 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 PPP1R3DO95685 299 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 HPXP02790 462 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 GDI2P50395 445 aaKnown RBP13.97□□□□□ -0.17
LSM1-201ENST00000311351 KLF3P57682 345 aaPredicted RBP13.97□□□□□ -0.17
LSM1-201ENST00000311351 NKPD1Q17RQ9 610 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms