RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 NMNAT2Q9BZQ4 307 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 RIBC2Q9H4K1 309 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 ESRP2Q9H6T0 727 aaKnown RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 USE1Q9NZ43 259 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 CRNNQ9UBG3 495 aaPredicted RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 FKBP7Q9Y680 259 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 SETXQ7Z333 2677 aaKnown RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 RIIAD1A6NNX1 92 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 M0R129 80 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ABCD4O14678 606 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 SURF4O15260 269 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 GOSR1O95249 250 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 IFNGP01579 166 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 IGKV3-15P01624 115 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 HMGN1P05114 100 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 GYPBP06028 91 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 CD3EP07766 207 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 MMP7P09237 267 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 CECR9P0C854 216 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 GAAP10253 952 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 CLUP10909 449 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 MSR1P21757 451 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 GUCA1AP43080 201 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 NR1H2P55055 460 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 RAB39AQ14964 217 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 MEP1BQ16820 701 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 C1QTNF12Q5T7M4 302 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ADAM5Q6NVV9 412 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 TMEM108Q6UXF1 575 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF771Q7L3S4 317 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 LILRB1Q8NHL6 650 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 PTP4A1Q93096 173 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 C9orf16Q9BUW7 83 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 RNF121Q9H920 327 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 TVP23BQ9NYZ1 205 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 RNF115Q9Y4L5 304 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZAR1LA6NP61 321 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 MGRN1O60291 552 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 UBL3O95164 117 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 TFP02787 698 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 CST2P09228 141 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF14P17017 642 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF3P17036 446 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF32P17041 273 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 PTAFRP25105 342 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 CADP27708 2225 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ARR3P36575 388 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ALDH3A2P51648 485 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 SLC25A1P53007 311 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 CACNA1DQ01668 2161 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZIK1Q3SY52 487 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 SLC36A2Q495M3 483 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 SLX4IPQ5VYV7 408 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 DNM1P34Q6PK57 102 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 LYPD4Q6UWN0 246 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF704Q6ZNC4 412 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 ZBTB49Q6ZSB9 765 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ABCA12Q86UK0 2595 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 ZNF584Q8IVC4 421 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 FAM169BQ8N8A8 192 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 PROKR2Q8NFJ6 384 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 KBTBD8Q8NFY9 601 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 NANOS1Q8WY41 292 aaKnown RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 EME1Q96AY2 570 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 OTULINQ96BN8 352 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 GABARAPL3Q9BY60 117 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 RACGAP1Q9H0H5 632 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 LIME1Q9H400 295 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 PLEKHF2Q9H8W4 249 aa11.09□□□□□ -0.63
SS18-202ENST00000269138 NKX1-2Q9UD57 310 aaPredicted RBP11.09□□□□□ -0.63
SS18-202ENST00000269138 HRNRQ86YZ3 2850 aaPredicted RBP11.08□□□□□ -0.64
SS18-202ENST00000269138 TVP23AA6NH52 213 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 SHISA9B4DS77 424 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 RAB36O95755 333 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 SPI1P17947 270 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 CALCRP30988 508 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 PSG4Q00888 419 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 NAAAQ02083 359 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 TRIP10Q15642 601 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 SNAPC1Q16533 368 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 KCNMB1Q16558 191 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 LRRC36Q1X8D7 754 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 PABPC1L2AQ5JQF8 200 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 LPCAT4Q643R3 524 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 C12orf73Q69YU5 71 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 TMEM53Q6P2H8 277 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 PLBD1Q6P4A8 553 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 CPOQ8IVL8 374 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 BBS1Q8NFJ9 593 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 SLC26A10Q8NG04 563 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 OR2T4Q8NH00 348 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 AKR7LQ8NHP1 331 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 WNT5BQ9H1J7 359 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 KCNN2Q9H2S1 579 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 CCNB1IP1Q9NPC3 277 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 HINT3Q9NQE9 182 aaKnown RBP11.08□□□□□ -0.64
SS18-202ENST00000269138 MRPL22Q9NWU5 206 aaKnown RBP11.08□□□□□ -0.64
SS18-202ENST00000269138 MOKQ9UQ07 419 aa11.08□□□□□ -0.64
SS18-202ENST00000269138 C12orf71A8MTZ7 269 aa11.07□□□□□ -0.64
SS18-202ENST00000269138 ATP6V1G2-DDX39BF2Z307 99 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms