RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SDR39U1Q9NRG7 319 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 EXOSC2Q13868 293 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC35D3Q5M8T2 416 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ZFP62Q8NB50 900 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 NXPE3Q969Y0 559 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 PINX1Q96BK5 328 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 MACROD1Q9BQ69 325 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 JAM3Q9BX67 310 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ASIC5Q9NY37 505 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 NME4O00746 187 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 HOXA4Q00056 320 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 DEFB110Q30KQ9 67 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 ADPRMQ3LIE5 342 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 LHX4Q969G2 390 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 CORINQ9Y5Q5 1042 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 KLRC4-KLRK1H3BQV0 150 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 EFSO43281 561 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 LILRB1Q8NHL6 650 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 DOK4Q8TEW6 326 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 C5AR2Q9P296 337 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 FGF7P21781 194 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC7A6Q92536 515 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 CDCP1Q9H5V8 836 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 VRTNQ9H8Y1 702 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 DNAJC15Q9Y5T4 150 aa12.86□□□□□ -0.35
CCDC88A-201ENST00000263630 GPR37O15354 613 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 ALKBH1Q13686 389 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 HYAL4Q2M3T9 481 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 DPY19L2P2Q6ZN68 376 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 CYS1Q717R9 158 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 LAX1Q8IWV1 398 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 OR2AK2Q8NG84 335 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 IKZF4Q9H2S9 585 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 TMEM59LQ9UK28 342 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 BTG1P62324 171 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 CALHM2Q9HA72 323 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 GPR55Q9Y2T6 319 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 CCL5P13501 91 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 C9orf135Q5VTT2 229 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 LHFPL2Q6ZUX7 228 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 OR1A1Q9P1Q5 309 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 POU2F2P09086 479 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 CPMP14384 443 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 DOC2BQ14184 412 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 PPP1R3CQ9UQK1 317 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 A6NDN8 102 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 EN2P19622 333 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 TCN2P20062 427 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF542PQ5EBM4 170 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 ABLIM2Q6H8Q1 611 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 MRPS24Q96EL2 167 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 KCNJ3P48549 501 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 HLXQ14774 488 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 Q6ZSR6 202 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 SIAH3Q8IW03 269 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 OR10C1Q96KK4 312 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 BCO1Q9HAY6 547 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 SNHG28P0DPA3 235 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 RGRP47804 291 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 RPL3LQ92901 407 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 ELF4Q99607 663 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 NPAS1Q99742 590 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 CDK5RAP2Q96SN8 1893 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 BICRAQ9NZM4 1560 aa12.85□□□□□ -0.35
CCDC88A-201ENST00000263630 NRARPQ7Z6K4 114 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MFSD4AQ8N468 514 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 RHOFQ9HBH0 211 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 SNRPBP14678 240 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 NME1P15531 152 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 HTR1FP30939 366 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 GJA4P35212 333 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 TAS2R60P59551 318 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 CMTM4Q8IZR5 234 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 C7orf43Q8WVR3 580 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF516Q92618 1163 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 KCNK15Q9H427 330 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MARCH4Q9P2E8 410 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 SLIT2O94813 1529 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 TRAV36DV7A0A075B6V5 113 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 OR2T8A6NH00 312 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 PAPLNO95428 1278 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 RPS16P62249 146 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 NXNL2Q5VZ03 156 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 AMMECR1LQ6DCA0 310 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF813Q6ZN06 617 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ANKRD53Q8N9V6 530 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ABHD4Q8TB40 342 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 OR8B4Q96RC9 309 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 IER2Q9BTL4 223 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 LRIT1Q9P2V4 623 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 HSFX1Q9UBD0 423 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 F13BP05160 661 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 EDN1P05305 212 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 RUNX3Q13761 415 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ATP6V1FQ16864 119 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 SCGB1D4Q6XE38 83 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 MBOAT2Q6ZWT7 520 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 ZDHHC16Q969W1 377 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 POM121L2Q96KW2 1035 aa12.84□□□□□ -0.35
CCDC88A-201ENST00000263630 FLVCR1Q9Y5Y0 555 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms