RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MIB2Q96AX9 1013 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ABHD6Q9BV23 337 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 ISG20L2Q9H9L3 353 aaKnown RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 CHMP1AQ9HD42 196 aaPredicted RBP10.4□□□□□ -0.74
VPS4A-201ENST00000254950 HAO2Q9NYQ3 351 aa10.4□□□□□ -0.74
VPS4A-201ENST00000254950 HTTP42858 3142 aa10.4□□□□□ -0.75
VPS4A-201ENST00000254950 TPD52L2O43399 206 aaKnown RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ORC5O43913 435 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF17P17021 662 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 NPR2P20594 1047 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SOX18P35713 384 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR3A3P47888 321 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR3A2P47893 321 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CAV3P56539 151 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FMODQ06828 376 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SLC17A1Q14916 467 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 PLA2G2CQ5R387 149 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FOXB2Q5VYV0 432 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OTPQ5XKR4 325 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 LIX1LQ8IVB5 337 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR5L1Q8NGL2 311 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OTOSQ8NHW6 89 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SMIM19Q96E16 107 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 TRIB1Q96RU8 372 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ISPDA4D126 451 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 PRRG2O14669 202 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 DOK2O60496 412 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 KLF7O75840 302 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 PLATP00750 562 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF181Q2M3W8 571 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CNIH2Q6PI25 160 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR9K2Q8NGE7 335 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FOXRED1Q96CU9 486 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CCDC32Q9BV29 185 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ADGRL4Q9HBW9 690 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 VSX1Q9NZR4 365 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 A3GALT2U3KPV4 340 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 PCNX2A6NKB5 2137 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 KIAA1549LQ6ZVL6 1849 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 P2RY10O00398 339 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 DNPH1O43598 174 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SSNA1O43805 119 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ASAH2BP0C7U1 165 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 TMEM225BP0DP42 221 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CTLA4P16410 223 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 GNG2P59768 71 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SPOCK1Q08629 439 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FAM109AQ8N4B1 249 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 GDPD1Q8N9F7 314 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 DTX3Q8N9I9 347 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 NPRL2Q8WTW4 380 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 BORCS8Q96FH0 119 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 TXNDC15Q96J42 360 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CCDC86Q9H6F5 360 aaKnown RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 C14orf119Q9NWQ9 140 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CHST2Q9Y4C5 530 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 RBM7Q9Y580 266 aaKnown RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 SEMA7AO75326 666 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FAPQ12884 760 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 MESTQ5EB52 335 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 AWAT2Q6E213 333 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR6V1Q8N148 313 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 OR6X1Q8NH79 312 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FCAMRQ8WWV6 532 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 FAM46BQ96A09 425 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 RADILQ96JH8 1075 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ALKBH3Q96Q83 286 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 CST11Q9H112 138 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 RABL2AQ9UBK7 228 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-201ENST00000254950 RABL2BQ9UNT1 228 aa10.39□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF106Q9H2Y7 1883 aaKnown RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 PMS2P2O95744 297 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 ABHD16AO95870 558 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 IGF2P01344 180 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SLC2A1P11166 492 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 PSKH1P11801 424 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 ACHEP22303 614 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 TNFSF8P32971 234 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 MAGEA5P43359 124 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 MUCL1Q96DR8 90 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 OR8B4Q96RC9 309 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 GDF2Q9UK05 429 aaPredicted RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 EEF1E1O43324 174 aaKnown RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 RBBP9O75884 186 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 IL2RAP01589 272 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 CLEC2LP0C7M8 214 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 RNPS1Q15287 305 aaKnown RBP10.38□□□□□ -0.75
VPS4A-201ENST00000254950 CEACAM16Q2WEN9 425 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 PYHIN1Q6K0P9 492 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 FAM71CQ8NEG0 241 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 OR13C9Q8NGT0 318 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 MOB1AQ9H8S9 216 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 SLCO1C1Q9NYB5 712 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 TIMM10BQ9Y5J6 103 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 AQP7P3A6NL99 342 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 TMEM229AB2RXF0 380 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 ACTL6AO96019 429 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 THY1P04216 161 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 PCMT1P22061 227 aa10.38□□□□□ -0.75
VPS4A-201ENST00000254950 RPS19P39019 145 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms