RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TGM1P22735 817 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 YIF1BQ5BJH7 314 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 C18orf63Q68DL7 685 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 WDR5BQ86VZ2 330 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 PTRH1Q86Y79 214 aaKnown RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 RDH10Q8IZV5 341 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 ZNF687Q8N1G0 1237 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CMSS1Q9BQ75 279 aaKnown RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 MENTQ9BUN1 341 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CXorf36Q9H7Y0 433 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 ACOXLQ9NUZ1 547 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CACFD1Q9UGQ2 172 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 SLCO1B1Q9Y6L6 691 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 ARHGAP33O14559 1287 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 ACSM4P0C7M7 580 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 DRD5P21918 477 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 NOVA1P51513 510 aaKnown RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 H3F3AP84243 136 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 OR6F1Q8NGZ6 308 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 TMEM100Q9NV29 134 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 SIDT1Q9NXL6 827 aaKnown RBP11.71□□□□□ -0.53
USP40-201ENST00000251722 GNG13Q9P2W3 67 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 CHRNA9Q9UGM1 479 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 KLK4Q9Y5K2 254 aa11.71□□□□□ -0.53
USP40-201ENST00000251722 A0A1W2PS29 197 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 C5orf67F2Z3F1 127 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 GABRR1P24046 479 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 HTR1FP30939 366 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SLC19A1P41440 591 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 THBS3P49746 956 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 PPT1P50897 306 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SLC22A24Q8N4F4 322 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 DNAJC5GQ8N7S2 189 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 IL17RDQ8NFM7 739 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SYNPRQ8TBG9 265 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SLAMF9Q96A28 289 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 C11orf54Q9H0W9 315 aaPredicted RBP11.71□□□□□ -0.54
USP40-201ENST00000251722 TMEM202A6NGA9 273 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 LEUTXA8MZ59 168 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 GABRB3P28472 473 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 GABRA5P31644 462 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 GABRA2P47869 451 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 MRPL19P49406 292 aaKnown RBP11.71□□□□□ -0.54
USP40-201ENST00000251722 FOXO1Q12778 655 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 PCK2Q16822 640 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 C9orf152Q5JTZ5 239 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 STT3BQ8TCJ2 826 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SLC39A7Q92504 469 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 SEMA4CQ9C0C4 833 aa11.71□□□□□ -0.54
USP40-201ENST00000251722 TRAV17A0A0B4J275 112 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 DBHP09172 617 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 EMP3P54852 163 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 LGALS4P56470 323 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 RPL27P61353 136 aaKnown RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 PMPCAQ10713 525 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 DBX2Q6ZNG2 339 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SLC46A3Q7Z3Q1 461 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 CA13Q8N1Q1 262 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ZNF740Q8NDX6 193 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 OPALINQ96PE5 141 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 WWTR1Q9GZV5 400 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SLC2A9Q9NRM0 540 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 GLCEO94923 617 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SCAF4O95104 1147 aaKnown RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 SIX6O95475 246 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 TMEM211Q6ICI0 200 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 VRK3Q8IV63 474 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ETFBKMTQ8IXQ9 262 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SLC30A7Q8NEW0 376 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 FOXQ1Q9C009 403 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 TINAGL1Q9GZM7 467 aaPredicted RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 PPT2Q9UMR5 302 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 LINC00862A6NCI5 91 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 KDM4EB2RXH2 506 aaPredicted RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 PLPP1O14494 284 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 KLK8O60259 260 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 GJB3O75712 270 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ALDOCP09972 364 aaKnown RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 MAJINQ3KP22 176 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 Q499Y3 187 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ZNF836Q6ZNA1 936 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 TMUB2Q71RG4 321 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SERPINA12Q8IW75 414 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 YIPF5Q969M3 257 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ZNF681Q96N22 645 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 TIMM10BQ9Y5J6 103 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 AGPAT2O15120 278 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 SPINT2O43291 252 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 CIDEAO60543 219 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 CLEC3BP05452 202 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 EIF4EP06730 217 aaKnown RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 SFTPCP11686 197 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 NID1P14543 1247 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 NQO2P16083 231 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 AQP2P41181 271 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 PTH2RP49190 550 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 ASTLQ6HA08 431 aaPredicted RBP11.7□□□□□ -0.54
USP40-201ENST00000251722 POLDIP2Q9Y2S7 368 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 PPIL1Q9Y3C6 166 aa11.7□□□□□ -0.54
USP40-201ENST00000251722 CSO75390 466 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms