RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OSBPL9Q96SU4 736 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 RAB34Q9BZG1 259 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 ODF2LQ9ULJ1 636 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 ATP2A1O14983 1001 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 PPFIA2O75334 1257 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 SURF6O75683 361 aaKnown RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 NUTM2DQ5VT03 806 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 NUTM2AQ8IVF1 878 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-220ENST00000641603 TMEM57Q8N5G2 664 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 CAPS2Q9BXY5 557 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 LMBRD1Q9NUN5 540 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 AKAP2Q9Y2D5 859 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 UHRF1BP1LA0JNW5 1464 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 CIB2O75838 187 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 MTHFSP49914 203 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 ELF2Q15723 593 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 EVI5LQ96CN4 794 aa5.3□□□□□ -1.56
SCN1A-220ENST00000641603 SCAF11Q99590 1463 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 KIF5AQ12840 1032 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC92Q53HC0 331 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 INTS8Q75QN2 995 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 TRMT1Q9NXH9 659 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 RAI14Q9P0K7 980 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 FYB2Q5VWT5 728 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 BAG1Q99933 345 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 AMPHP49418 695 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CUL7Q14999 1698 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 TROQ12816 1431 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CASQ2O14958 399 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 ACTN4O43707 911 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 STMN1P16949 149 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 TSC1Q92574 1164 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 LLPHQ9BRT6 129 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 YEATS2Q9ULM3 1422 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 BRPF1P55201 1214 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 APOBRQ0VD83 1088 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 DZIP1Q86YF9 867 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CNNM3Q8NE01 707 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 RABEP2Q9H5N1 569 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 RBM27Q9P2N5 1060 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 TFIP11Q9UBB9 837 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 C9orf84Q5VXU9 1444 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 RTL1A6NKG5 1358 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 NFE2L2Q16236 605 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 RAB11FIP4Q86YS3 637 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CKAP2LQ8IYA6 745 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 ZNF131P52739 623 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CNOT10Q9H9A5 744 aaKnown RBP5.29□□□□□ -1.56
SCN1A-220ENST00000641603 HOMER3Q9NSC5 361 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 NKIRAS1Q9NYS0 192 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 TRAF1Q13077 416 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CAMK4Q16566 473 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 NBPF20Q3BBV1 942 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 C1orf141Q5JVX7 400 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 STAG1Q8WVM7 1258 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC68Q9H2F9 335 aa5.29□□□□□ -1.56
SCN1A-220ENST00000641603 ABCC2Q92887 1545 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 BRD1O95696 1058 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TRIM27P14373 513 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 MXRA7P84157 204 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PPP2R5AQ15172 486 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 VWA3BQ502W6 1294 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TDRD7Q8NHU6 1098 aaKnown RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TSPYL4Q9UJ04 414 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 CCDC26Q8TAB7 109 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 FAM135BQ49AJ0 1406 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 LMNAP02545 664 aaKnown RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PODNQ7Z5L7 613 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 TUBB6Q9BUF5 446 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 DNAI2Q9GZS0 605 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PARP2Q9UGN5 583 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ARHGAP31Q2M1Z3 1444 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 CFTRP13569 1480 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 VGLL3A8MV65 326 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ATP2B1P20020 1258 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 RWDD2BP57060 319 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 LMOD2Q6P5Q4 547 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PPP1R12CQ9BZL4 782 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 KIF14Q15058 1648 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ERCC6Q03468 1493 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 DEUP1Q05D60 604 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 DDX27Q96GQ7 796 aaKnown RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 NUP58Q9BVL2 599 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 RNF14Q9UBS8 474 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 FAM135AQ9P2D6 1515 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 BICDL2A1A5D9 508 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 PPP1R12AO14974 1030 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 CYP26C1Q6V0L0 522 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ANKRD44Q8N8A2 993 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 FBXO41Q8TF61 875 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 MAML3Q96JK9 1138 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 SKIDA1Q1XH10 827 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 DACT1Q9NYF0 836 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ANAPC4Q9UJX5 808 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 ZNF215Q9UL58 517 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-220ENST00000641603 MACROD2A1Z1Q3 448 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 SYT10Q6XYQ8 523 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 MICAL1Q8TDZ2 1067 aa5.28□□□□□ -1.56
SCN1A-220ENST00000641603 MPHOSPH6Q99547 160 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms