RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CD2BP2O95400 341 aaKnown RBP22.19■■□□□ 1.14
CLN3-263ENST00000637871 HSPA4P34932 840 aa22.19■■□□□ 1.14
CLN3-263ENST00000637871 UBE3BQ7Z3V4 1068 aa22.19■■□□□ 1.14
CLN3-263ENST00000637871 DIAPH3Q9NSV4 1193 aa22.19■■□□□ 1.14
CLN3-263ENST00000637871 RAD50Q92878 1312 aa22.18■■□□□ 1.14
CLN3-263ENST00000637871 TNRC6CQ9HCJ0 1690 aaKnown RBP22.18■■□□□ 1.14
CLN3-263ENST00000637871 RFX5P48382 616 aaPredicted RBP22.18■■□□□ 1.14
CLN3-263ENST00000637871 PRR5LQ6MZQ0 368 aa22.18■■□□□ 1.14
CLN3-263ENST00000637871 CLEC17AQ6ZS10 378 aa22.18■■□□□ 1.14
CLN3-263ENST00000637871 ANKRD31Q8N7Z5 1873 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 NPHP1O15259 732 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 ERFEQ4G0M1 354 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 PARP10Q53GL7 1025 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 KLHL34Q8N239 644 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 CNBD1Q8NA66 436 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 FAM89AQ96GI7 184 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 GPR108Q9NPR9 543 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 TRMT112Q9UI30 125 aaKnown RBP22.17■■□□□ 1.14
CLN3-263ENST00000637871 PTPN12Q05209 780 aaKnown RBP22.17■■□□□ 1.14
CLN3-263ENST00000637871 EAF2Q96CJ1 260 aaPredicted RBP22.17■■□□□ 1.14
CLN3-263ENST00000637871 UTP14AQ9BVJ6 771 aaKnown RBP22.17■■□□□ 1.14
CLN3-263ENST00000637871 FBXO3Q9UK99 471 aa22.17■■□□□ 1.14
CLN3-263ENST00000637871 AK9Q5TCS8 1911 aa22.16■■□□□ 1.14
CLN3-263ENST00000637871 EPHA10Q5JZY3 1008 aa22.16■■□□□ 1.14
CLN3-263ENST00000637871 PPP1R1BQ9UD71 204 aaPredicted RBP22.16■■□□□ 1.14
CLN3-263ENST00000637871 DDX60Q8IY21 1712 aaKnown RBP22.15■■□□□ 1.14
CLN3-263ENST00000637871 LRP5O75197 1615 aa22.15■■□□□ 1.14
CLN3-263ENST00000637871 NEK4P51957 841 aa22.15■■□□□ 1.14
CLN3-263ENST00000637871 SKOR2Q2VWA4 1001 aaPredicted RBP22.14■■□□□ 1.14
CLN3-263ENST00000637871 C10orf71Q711Q0 1435 aa22.14■■□□□ 1.14
CLN3-263ENST00000637871 SNRKQ9NRH2 765 aa22.14■■□□□ 1.14
CLN3-263ENST00000637871 RFX7Q2KHR2 1363 aa22.14■■□□□ 1.13
CLN3-263ENST00000637871 ATP5JP18859 108 aa22.13■■□□□ 1.13
CLN3-263ENST00000637871 GTF2E1P29083 439 aaPredicted RBP22.13■■□□□ 1.13
CLN3-263ENST00000637871 INTS4Q96HW7 963 aaKnown RBP22.13■■□□□ 1.13
CLN3-263ENST00000637871 GOLGA6L22H0YM25 854 aa22.13■■□□□ 1.13
CLN3-263ENST00000637871 HCLS1P14317 486 aaPredicted RBP22.13■■□□□ 1.13
CLN3-263ENST00000637871 FOXO4P98177 505 aa22.13■■□□□ 1.13
CLN3-263ENST00000637871 TPTE2Q6XPS3 522 aa22.13■■□□□ 1.13
CLN3-263ENST00000637871 NYXQ9GZU5 481 aa22.13■■□□□ 1.13
CLN3-263ENST00000637871 LSG1Q9H089 658 aaKnown RBP22.13■■□□□ 1.13
CLN3-263ENST00000637871 COL11A2P13942 1736 aaPredicted RBP22.12■■□□□ 1.13
CLN3-263ENST00000637871 LMBR1LQ6UX01 489 aa22.12■■□□□ 1.13
CLN3-263ENST00000637871 C3orf67Q6ZVT6 689 aa22.12■■□□□ 1.13
CLN3-263ENST00000637871 TNPO1Q92973 898 aaKnown RBP22.12■■□□□ 1.13
CLN3-263ENST00000637871 KIF13BQ9NQT8 1826 aa22.12■■□□□ 1.13
CLN3-263ENST00000637871 LAMB2P55268 1798 aa22.12■■□□□ 1.13
CLN3-263ENST00000637871 SH3TC1Q8TE82 1336 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 CIAO1O76071 339 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 IL15P40933 162 aaPredicted RBP22.11■■□□□ 1.13
CLN3-263ENST00000637871 ST5P78524 1137 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 TNNI3KQ59H18 835 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 ZBTB38Q8NAP3 1195 aaPredicted RBP22.11■■□□□ 1.13
CLN3-263ENST00000637871 PLA2G12BQ9BX93 195 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 SIL1Q9H173 461 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 FPGT-TNNI3KV9GXZ4 949 aa22.11■■□□□ 1.13
CLN3-263ENST00000637871 GOLGB1Q14789 3259 aaKnown RBP22.11■■□□□ 1.13
CLN3-263ENST00000637871 MAP4K4O95819 1239 aaPredicted RBP22.1■■□□□ 1.13
CLN3-263ENST00000637871 CUL4AQ13619 759 aa22.1■■□□□ 1.13
CLN3-263ENST00000637871 KCNB2Q92953 911 aa22.1■■□□□ 1.13
CLN3-263ENST00000637871 CCDC8Q9H0W5 538 aaPredicted RBP22.1■■□□□ 1.13
CLN3-263ENST00000637871 KIAA1551Q9HCM1 1747 aa22.1■■□□□ 1.13
CLN3-263ENST00000637871 PCCAP05165 728 aaPredicted RBP22.09■■□□□ 1.13
CLN3-263ENST00000637871 CWC27Q6UX04 472 aaKnown RBP22.09■■□□□ 1.13
CLN3-263ENST00000637871 IRS4O14654 1257 aaPredicted RBP22.09■■□□□ 1.13
CLN3-263ENST00000637871 TM6SF1Q9BZW5 370 aa22.09■■□□□ 1.13
CLN3-263ENST00000637871 FHDC1Q9C0D6 1143 aaPredicted RBP22.09■■□□□ 1.13
CLN3-263ENST00000637871 NLGN2Q8NFZ4 835 aa22.07■■□□□ 1.12
CLN3-263ENST00000637871 TMX3Q96JJ7 454 aa22.07■■□□□ 1.12
CLN3-263ENST00000637871 WWC3Q9ULE0 1092 aa22.07■■□□□ 1.12
CLN3-263ENST00000637871 CHRNA5P30532 468 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 TFCP2Q12800 502 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 CCDC85AQ96PX6 553 aaPredicted RBP22.06■■□□□ 1.12
CLN3-263ENST00000637871 PALD1Q9ULE6 856 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 CDHR2Q9BYE9 1310 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 EYA2O00167 538 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 TRAK2O60296 914 aa22.06■■□□□ 1.12
CLN3-263ENST00000637871 MYH3P11055 1940 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 CYP2E1P05181 493 aaPredicted RBP22.05■■□□□ 1.12
CLN3-263ENST00000637871 ZKSCAN1P17029 563 aaPredicted RBP22.05■■□□□ 1.12
CLN3-263ENST00000637871 RNF20Q5VTR2 975 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 KLHDC4Q8TBB5 520 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 FSD1Q9BTV5 496 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 BRIP1Q9BX63 1249 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 ISY1Q9ULR0 285 aaKnown RBP22.05■■□□□ 1.12
CLN3-263ENST00000637871 SNX14Q9Y5W7 946 aa22.05■■□□□ 1.12
CLN3-263ENST00000637871 COL4A1P02462 1669 aa22.04■■□□□ 1.12
CLN3-263ENST00000637871 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-263ENST00000637871 BOLA2Q9H3K6 86 aa22.04■■□□□ 1.12
CLN3-263ENST00000637871 CCDC171Q6TFL3 1326 aa22.04■■□□□ 1.12
CLN3-263ENST00000637871 TAF1P21675 1872 aa22.04■■□□□ 1.12
CLN3-263ENST00000637871 CACNA1SQ13698 1873 aa22.04■■□□□ 1.12
CLN3-263ENST00000637871 A0A0G2JLW4 131 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 SLC10A5Q5PT55 438 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 MAP4K1Q92918 833 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 HAUS7Q99871 368 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 IL25Q9H293 177 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 DBNLQ9UJU6 430 aaKnown RBP22.03■■□□□ 1.12
CLN3-263ENST00000637871 RIC1Q4ADV7 1423 aa22.03■■□□□ 1.12
CLN3-263ENST00000637871 PSMA5P28066 241 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms