RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 GLTPD2A6NH11 291 aa22.97■■□□□ 1.27
CLN3-259ENST00000637551 KIAA2012Q0VF49 1180 aa22.97■■□□□ 1.27
CLN3-259ENST00000637551 FAM161AQ3B820 660 aa22.97■■□□□ 1.27
CLN3-259ENST00000637551 EYA3Q99504 573 aa22.97■■□□□ 1.27
CLN3-259ENST00000637551 FZD9O00144 591 aa22.96■■□□□ 1.27
CLN3-259ENST00000637551 GNAI3P08754 354 aa22.96■■□□□ 1.27
CLN3-259ENST00000637551 CCDC57Q2TAC2 916 aa22.96■■□□□ 1.27
CLN3-259ENST00000637551 LMBR1LQ6UX01 489 aa22.96■■□□□ 1.27
CLN3-259ENST00000637551 ZNF277Q9NRM2 450 aaPredicted RBP22.96■■□□□ 1.27
CLN3-259ENST00000637551 UBTFL1P0CB47 393 aaPredicted RBP22.95■■□□□ 1.26
CLN3-259ENST00000637551 SCN4AP35499 1836 aa22.95■■□□□ 1.26
CLN3-259ENST00000637551 KAZALD1Q96I82 304 aa22.95■■□□□ 1.26
CLN3-259ENST00000637551 SUCLG2Q96I99 432 aa22.95■■□□□ 1.26
CLN3-259ENST00000637551 MPHOSPH8Q99549 860 aa22.95■■□□□ 1.26
CLN3-259ENST00000637551 ANKRD2Q9GZV1 360 aa22.95■■□□□ 1.26
CLN3-259ENST00000637551 A0A1B0GUL6 1792 aa22.94■■□□□ 1.26
CLN3-259ENST00000637551 EPHA10Q5JZY3 1008 aa22.93■■□□□ 1.26
CLN3-259ENST00000637551 LARGE2Q8N3Y3 721 aa22.93■■□□□ 1.26
CLN3-259ENST00000637551 FRAT1Q92837 279 aaPredicted RBP22.93■■□□□ 1.26
CLN3-259ENST00000637551 NSFL1CQ9UNZ2 370 aaKnown RBP22.93■■□□□ 1.26
CLN3-259ENST00000637551 PPIP5K2O43314 1243 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 ATP2B4P23634 1241 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 NIM1KQ8IY84 436 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 L3MBTL3Q96JM7 780 aaPredicted RBP22.92■■□□□ 1.26
CLN3-259ENST00000637551 BICC1Q9H694 974 aaKnown RBP22.92■■□□□ 1.26
CLN3-259ENST00000637551 ANKIB1Q9P2G1 1089 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 GGA1Q9UJY5 639 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 FBXO3Q9UK99 471 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 RCAN3Q9UKA8 241 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 MINPP1Q9UNW1 487 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 LEMD3Q9Y2U8 911 aa22.92■■□□□ 1.26
CLN3-259ENST00000637551 MED23Q9ULK4 1368 aa22.91■■□□□ 1.26
CLN3-259ENST00000637551 GPSM2P81274 684 aa22.91■■□□□ 1.26
CLN3-259ENST00000637551 FTSJ3Q8IY81 847 aaKnown RBP22.91■■□□□ 1.26
CLN3-259ENST00000637551 DZIP1LQ8IYY4 767 aaKnown RBP22.91■■□□□ 1.26
CLN3-259ENST00000637551 ANKRD44Q8N8A2 993 aa22.91■■□□□ 1.26
CLN3-259ENST00000637551 TBC1D16Q8TBP0 767 aa22.91■■□□□ 1.26
CLN3-259ENST00000637551 CCDC85AQ96PX6 553 aaPredicted RBP22.91■■□□□ 1.26
CLN3-259ENST00000637551 COL4A5P29400 1685 aa22.9■■□□□ 1.26
CLN3-259ENST00000637551 PSME4Q14997 1843 aa22.9■■□□□ 1.26
CLN3-259ENST00000637551 MTX1Q13505 466 aa22.9■■□□□ 1.26
CLN3-259ENST00000637551 WASHC4Q2M389 1173 aa22.9■■□□□ 1.26
CLN3-259ENST00000637551 GPC2Q8N158 579 aa22.9■■□□□ 1.26
CLN3-259ENST00000637551 EIF6P56537 245 aaKnown RBP22.89■■□□□ 1.25
CLN3-259ENST00000637551 POLLQ9UGP5 575 aa22.89■■□□□ 1.25
CLN3-259ENST00000637551 ZNRF3Q9ULT6 936 aa22.89■■□□□ 1.25
CLN3-259ENST00000637551 ZNF609O15014 1411 aa22.89■■□□□ 1.25
CLN3-259ENST00000637551 UFL1O94874 794 aa22.88■■□□□ 1.25
CLN3-259ENST00000637551 SLC34A2O95436 690 aa22.88■■□□□ 1.25
CLN3-259ENST00000637551 AOC3Q16853 763 aa22.88■■□□□ 1.25
CLN3-259ENST00000637551 TAF7LQ5H9L4 462 aa22.88■■□□□ 1.25
CLN3-259ENST00000637551 C15orf52Q6ZUT6 534 aaKnown RBP22.88■■□□□ 1.25
CLN3-259ENST00000637551 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.88■■□□□ 1.25
CLN3-259ENST00000637551 CHMP3Q9Y3E7 222 aa22.88■■□□□ 1.25
CLN3-259ENST00000637551 IQCA1LA6NCM1 817 aa22.87■■□□□ 1.25
CLN3-259ENST00000637551 LDHAL6AQ6ZMR3 332 aa22.87■■□□□ 1.25
CLN3-259ENST00000637551 MROH5Q6ZUA9 1318 aa22.86■■□□□ 1.25
CLN3-259ENST00000637551 C6orf229H3BNL8 230 aa22.86■■□□□ 1.25
CLN3-259ENST00000637551 VEGFAP15692 232 aaPredicted RBP22.86■■□□□ 1.25
CLN3-259ENST00000637551 MEIS3Q99687 375 aa22.86■■□□□ 1.25
CLN3-259ENST00000637551 ZC3H12CQ9C0D7 883 aaKnown RBP22.86■■□□□ 1.25
CLN3-259ENST00000637551 CHMP4BQ9H444 224 aaKnown RBP22.86■■□□□ 1.25
CLN3-259ENST00000637551 CHRNDQ07001 517 aa22.85■■□□□ 1.25
CLN3-259ENST00000637551 TMEM57Q8N5G2 664 aa22.85■■□□□ 1.25
CLN3-259ENST00000637551 GNAI2P04899 355 aa22.84■■□□□ 1.25
CLN3-259ENST00000637551 PDE3AQ14432 1141 aa22.84■■□□□ 1.25
CLN3-259ENST00000637551 TNIP1Q15025 636 aa22.84■■□□□ 1.25
CLN3-259ENST00000637551 SLC51AQ86UW1 340 aa22.84■■□□□ 1.25
CLN3-259ENST00000637551 CLUAP1Q96AJ1 413 aa22.84■■□□□ 1.25
CLN3-259ENST00000637551 PODNQ7Z5L7 613 aa22.83■■□□□ 1.25
CLN3-259ENST00000637551 CNNM1Q9NRU3 951 aa22.83■■□□□ 1.25
CLN3-259ENST00000637551 RIPOR2Q9Y4F9 1068 aa22.83■■□□□ 1.25
CLN3-259ENST00000637551 LRRFIP2Q9Y608 721 aaKnown RBP22.83■■□□□ 1.25
CLN3-259ENST00000637551 ZNF804BA4D1E1 1349 aa22.82■■□□□ 1.24
CLN3-259ENST00000637551 ZNF541Q9H0D2 1346 aa22.82■■□□□ 1.24
CLN3-259ENST00000637551 CIAO1O76071 339 aa22.82■■□□□ 1.24
CLN3-259ENST00000637551 RFX5P48382 616 aaPredicted RBP22.81■■□□□ 1.24
CLN3-259ENST00000637551 UBE4AQ14139 1066 aa22.81■■□□□ 1.24
CLN3-259ENST00000637551 COA1Q9GZY4 146 aa22.81■■□□□ 1.24
CLN3-259ENST00000637551 RPS12P25398 132 aaKnown RBP22.8■■□□□ 1.24
CLN3-259ENST00000637551 MMP14P50281 582 aa22.8■■□□□ 1.24
CLN3-259ENST00000637551 CIAPIN1Q6FI81 312 aa22.8■■□□□ 1.24
CLN3-259ENST00000637551 COPRSQ9NQ92 184 aa22.8■■□□□ 1.24
CLN3-259ENST00000637551 DDX19BQ9UMR2 479 aa22.8■■□□□ 1.24
CLN3-259ENST00000637551 ECE2O60344 883 aa22.79■■□□□ 1.24
CLN3-259ENST00000637551 DDNO94850 711 aaPredicted RBP22.79■■□□□ 1.24
CLN3-259ENST00000637551 RLBP1P12271 317 aa22.79■■□□□ 1.24
CLN3-259ENST00000637551 PTPN12Q05209 780 aaKnown RBP22.79■■□□□ 1.24
CLN3-259ENST00000637551 CXCL9Q07325 125 aa22.79■■□□□ 1.24
CLN3-259ENST00000637551 ITPRIPQ8IWB1 547 aa22.79■■□□□ 1.24
CLN3-259ENST00000637551 SCN9AQ15858 1988 aa22.79■■□□□ 1.24
CLN3-259ENST00000637551 EYA2O00167 538 aa22.78■■□□□ 1.24
CLN3-259ENST00000637551 ZBTB7BO15156 539 aaPredicted RBP22.78■■□□□ 1.24
CLN3-259ENST00000637551 KCNJ4P48050 445 aa22.78■■□□□ 1.24
CLN3-259ENST00000637551 DPF2Q92785 391 aa22.78■■□□□ 1.24
CLN3-259ENST00000637551 TNNQ9UQP3 1299 aa22.78■■□□□ 1.24
CLN3-259ENST00000637551 IRS2Q9Y4H2 1338 aa22.78■■□□□ 1.24
CLN3-259ENST00000637551 YDJCA8MPS7 323 aa22.77■■□□□ 1.24
CLN3-259ENST00000637551 POTECB2RU33 542 aa22.77■■□□□ 1.24
CLN3-259ENST00000637551 ZBTB22O15209 634 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms