RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZSCAN22P10073 491 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 COL13A1Q5TAT6 717 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 SLC17A8Q8NDX2 589 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 RPAP1Q9BWH6 1393 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 SRGAP3O43295 1099 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 PTGER2P43116 358 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 C9orf78Q9NZ63 289 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 PIM2Q9P1W9 311 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 RBM27Q9P2N5 1060 aaKnown RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 NSFL1CQ9UNZ2 370 aaKnown RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 CICQ96RK0 1608 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 MAP3K19Q56UN5 1328 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 RAD50Q92878 1312 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 ANKRD36CQ5JPF3 1778 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 DLL1O00548 723 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 NRDCO43847 1150 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 HSPA4P34932 840 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 COL9A3Q14050 684 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 DEFB115Q30KQ5 88 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 PLEKHO1Q53GL0 409 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 DALRD3Q5D0E6 543 aaKnown RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 C1orf141Q5JVX7 400 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 RHPN1Q8TCX5 695 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 HHIPL1Q96JK4 782 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 PDRG1Q9NUG6 133 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 FAM13BQ9NYF5 915 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 NUTM2FA1L443 756 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 STX6O43752 255 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 KRT85P78386 507 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 G3BP1Q13283 466 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 TMEM87AQ8NBN3 555 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 GPT2Q8TD30 523 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 SSH3Q8TE77 659 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 DNAAF4Q8WXU2 420 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 CARD10Q9BWT7 1032 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 THSD7AQ9UPZ6 1657 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 KAT6BQ8WYB5 2073 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 ALDH1L1O75891 902 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 ST3GAL1Q11201 340 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 ZRSR1Q15695 479 aaKnown RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 UPF3BQ9BZI7 483 aaKnown RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 MIS18AQ9NYP9 233 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 CAVIN2O95810 425 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 NEXNQ0ZGT2 675 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 KRT32Q14532 448 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 AMOTQ4VCS5 1084 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 G2E3Q7L622 706 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 TICAM2Q86XR7 235 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 DNAJC5GQ8N7S2 189 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 EVI5LQ96CN4 794 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 EYA1Q99502 592 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 TM6SF1Q9BZW5 370 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 TMEM63CQ9P1W3 806 aa4.72□□□□□ -1.65
SCN1A-214ENST00000637038 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-214ENST00000637038 VPS37CA5D8V6 355 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 SGSM2O43147 1006 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 EIF2S2P20042 333 aaKnown RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 XPCQ01831 940 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 POLA2Q14181 598 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 VPS53Q5VIR6 699 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 PPP1R42Q7Z4L9 355 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 USP48Q86UV5 1035 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 DRC7Q8IY82 874 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 NECTIN2Q92692 538 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 HTATIP2Q9BUP3 242 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 IL1RAPL2Q9NP60 686 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 ECHDC1Q9NTX5 307 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 BCORQ6W2J9 1755 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 TNS2Q63HR2 1409 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 CNTNAP1P78357 1384 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 FIBPO43427 364 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 F13A1P00488 732 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 DHX8Q14562 1220 aaKnown RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 CC2D2BQ6DHV5 1058 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 NUTM1Q86Y26 1132 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 FAM122AQ96E09 287 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 LTV1Q96GA3 475 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 ORAI2Q96SN7 254 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 SCAND2PQ9GZW5 306 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 HDAC9Q9UKV0 1011 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 TNS1Q9HBL0 1735 aaKnown RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 LMNB1P20700 586 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 CASTP20810 708 aaKnown RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 GPR153Q6NV75 609 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 ABTB2Q8N961 1025 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 CHAMP1Q96JM3 812 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 JAKMIP1Q96N16 626 aaKnown RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 TMEM106CQ9BVX2 250 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 HMG20BQ9P0W2 317 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 DBF4Q9UBU7 674 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-214ENST00000637038 PLCH1Q4KWH8 1693 aa4.71□□□□□ -1.66
SCN1A-214ENST00000637038 USP42Q9H9J4 1324 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 MAP3K11Q16584 847 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 NUP62CLQ9H1M0 184 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 DDX19AQ9NUU7 478 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 USP25Q9UHP3 1055 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 ITGB4P16144 1822 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 DLEC1Q9Y238 1755 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 FOXD4L6Q3SYB3 417 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms