RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 MYH14Q7Z406 1995 aaKnown RBP18.76■□□□□ 0.59
CLN3-251ENST00000636853 FAM177BA6PVY3 158 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 LARGE1O95461 756 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 PTMSP20962 102 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 GORABQ5T7V8 394 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 RNF20Q5VTR2 975 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 LDHAL6AQ6ZMR3 332 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 ANKRD18BA2A2Z9 1011 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 PDE8AO60658 829 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 RIPOR2Q9Y4F9 1068 aa18.75■□□□□ 0.59
CLN3-251ENST00000636853 RPAP1Q9BWH6 1393 aaPredicted RBP18.74■□□□□ 0.59
CLN3-251ENST00000636853 METTL24Q5JXM2 366 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 BRD1O95696 1058 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 FKBP4Q02790 459 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLN3-251ENST00000636853 SKOR2Q2VWA4 1001 aaPredicted RBP18.74■□□□□ 0.59
CLN3-251ENST00000636853 CCDC158Q5M9N0 1113 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 TTC39AQ5SRH9 613 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 SUSD4Q5VX71 490 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 CNNM1Q9NRU3 951 aa18.74■□□□□ 0.59
CLN3-251ENST00000636853 RIC1Q4ADV7 1423 aa18.73■□□□□ 0.59
CLN3-251ENST00000636853 BCL9LQ86UU0 1499 aa18.73■□□□□ 0.59
CLN3-251ENST00000636853 PSMA5P28066 241 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 USPL1Q5W0Q7 1092 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 TCEANC2Q96MN5 208 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 SH3TC1Q8TE82 1336 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 CAMTA2O94983 1202 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 HCLS1P14317 486 aaPredicted RBP18.72■□□□□ 0.59
CLN3-251ENST00000636853 VPS72Q15906 364 aa18.72■□□□□ 0.59
CLN3-251ENST00000636853 DTNBO60941 627 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 SCARF1Q14162 830 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 ATP2B3Q16720 1220 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.71■□□□□ 0.59
CLN3-251ENST00000636853 HMG20BQ9P0W2 317 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 KCNQ4P56696 695 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 BLOC1S2Q6QNY1 142 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 CCDC83Q8IWF9 413 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 SMARCC1Q92922 1105 aaPredicted RBP18.71■□□□□ 0.59
CLN3-251ENST00000636853 LMBRD1Q9NUN5 540 aa18.71■□□□□ 0.59
CLN3-251ENST00000636853 RREB1Q92766 1687 aa18.7■□□□□ 0.58
CLN3-251ENST00000636853 ZMYM1Q5SVZ6 1142 aa18.7■□□□□ 0.58
CLN3-251ENST00000636853 UBE2Q2Q8WVN8 375 aa18.7■□□□□ 0.58
CLN3-251ENST00000636853 HELLSQ9NRZ9 838 aa18.7■□□□□ 0.58
CLN3-251ENST00000636853 DDX49Q9Y6V7 483 aaKnown RBP18.7■□□□□ 0.58
CLN3-251ENST00000636853 ME3Q16798 604 aa18.7■□□□□ 0.58
CLN3-251ENST00000636853 U3KPZ7 1027 aaPredicted RBP18.7■□□□□ 0.58
CLN3-251ENST00000636853 RNF113AO15541 343 aaKnown RBP18.69■□□□□ 0.58
CLN3-251ENST00000636853 RPS6KB1P23443 525 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 TSGA10IPQ3SY00 556 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 PTF1AQ7RTS3 328 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 UTP14AQ9BVJ6 771 aaKnown RBP18.69■□□□□ 0.58
CLN3-251ENST00000636853 TPCN1Q9ULQ1 816 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.69■□□□□ 0.58
CLN3-251ENST00000636853 PRPF40AO75400 957 aaKnown RBP18.69■□□□□ 0.58
CLN3-251ENST00000636853 PI16Q6UXB8 463 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 VGLL2Q8N8G2 317 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 NECAB1Q8N987 351 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 SMC3Q9UQE7 1217 aa18.69■□□□□ 0.58
CLN3-251ENST00000636853 NIP7Q9Y221 180 aaKnown RBP eCLIP18.69■□□□□ 0.58
CLN3-251ENST00000636853 SPEF2Q9C093 1822 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 GOLGA6L3A6NEY3 463 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 CYP21A2P08686 494 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 ZAP70P43403 619 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 ST3GAL1Q11201 340 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 ZSCAN31Q96LW9 406 aaPredicted RBP18.68■□□□□ 0.58
CLN3-251ENST00000636853 MAST3O60307 1309 aa18.68■□□□□ 0.58
CLN3-251ENST00000636853 FSD2A1L4K1 749 aa18.67■□□□□ 0.58
CLN3-251ENST00000636853 KLHL40Q2TBA0 621 aa18.67■□□□□ 0.58
CLN3-251ENST00000636853 FOXD4L6Q3SYB3 417 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 FOXD4L3Q6VB84 417 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 LINC00116Q8NCU8 138 aa18.67■□□□□ 0.58
CLN3-251ENST00000636853 SH2B1Q9NRF2 756 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 FNBP4Q8N3X1 1017 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 HELBQ8NG08 1087 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 CICQ96RK0 1608 aaPredicted RBP18.67■□□□□ 0.58
CLN3-251ENST00000636853 M0R2C6 588 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 PDE8BO95263 885 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 COL5A3P25940 1745 aaPredicted RBP18.66■□□□□ 0.58
CLN3-251ENST00000636853 WDR33Q9C0J8 1336 aaKnown RBP18.66■□□□□ 0.58
CLN3-251ENST00000636853 NCLP19338 710 aaKnown RBP18.66■□□□□ 0.58
CLN3-251ENST00000636853 TOB2Q14106 344 aaPredicted RBP18.66■□□□□ 0.58
CLN3-251ENST00000636853 KRT32Q14532 448 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 PARP10Q53GL7 1025 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 L1TD1Q5T7N2 865 aaKnown RBP18.66■□□□□ 0.58
CLN3-251ENST00000636853 OSBP2Q969R2 916 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 NEK1Q96PY6 1258 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 SEC31BQ9NQW1 1179 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 USP21Q9UK80 565 aa18.66■□□□□ 0.58
CLN3-251ENST00000636853 MCAMP43121 646 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 TICAM2Q86XR7 235 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 AK7Q96M32 723 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 A0A0G2JLW4 131 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 NTSR2O95665 410 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 HSPD1P10809 573 aaKnown RBP18.65■□□□□ 0.58
CLN3-251ENST00000636853 SYT1P21579 422 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 GJB2P29033 226 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 FAM182BQ5T319 152 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 SMIM5Q71RC9 77 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 DSCC1Q9BVC3 393 aa18.65■□□□□ 0.58
CLN3-251ENST00000636853 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.65■□□□□ 0.58
CLN3-251ENST00000636853 ANKRD1Q15327 319 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms