RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PNISRQ8TF01 805 aaKnown RBP19.29■□□□□ 0.68
CLN3-249ENST00000636685 NUDCQ9Y266 331 aa19.29■□□□□ 0.68
CLN3-249ENST00000636685 CENPFP49454 3210 aa19.29■□□□□ 0.68
CLN3-249ENST00000636685 COL4A1P02462 1669 aa19.29■□□□□ 0.68
CLN3-249ENST00000636685 RBBP6Q7Z6E9 1792 aaKnown RBP19.29■□□□□ 0.68
CLN3-249ENST00000636685 TRIOBPQ9H2D6 2365 aa19.28■□□□□ 0.68
CLN3-249ENST00000636685 VIL1P09327 827 aaKnown RBP19.28■□□□□ 0.68
CLN3-249ENST00000636685 ZNF428Q96B54 188 aa19.28■□□□□ 0.68
CLN3-249ENST00000636685 TRMT112Q9UI30 125 aaKnown RBP19.28■□□□□ 0.68
CLN3-249ENST00000636685 ERBB4Q15303 1308 aa19.27■□□□□ 0.68
CLN3-249ENST00000636685 CEP290O15078 2479 aa19.27■□□□□ 0.68
CLN3-249ENST00000636685 ANXA1P04083 346 aa19.27■□□□□ 0.68
CLN3-249ENST00000636685 PDIA6Q15084 440 aa19.27■□□□□ 0.68
CLN3-249ENST00000636685 PROSER3Q2NL68 480 aa19.27■□□□□ 0.68
CLN3-249ENST00000636685 CELF1Q92879 486 aaKnown RBP19.27■□□□□ 0.68
CLN3-249ENST00000636685 BRCA2P51587 3418 aa19.26■□□□□ 0.67
CLN3-249ENST00000636685 SH3TC1Q8TE82 1336 aa19.26■□□□□ 0.67
CLN3-249ENST00000636685 SZT2Q5T011 3432 aa19.26■□□□□ 0.67
CLN3-249ENST00000636685 ZNF280AP59817 542 aaPredicted RBP19.26■□□□□ 0.67
CLN3-249ENST00000636685 PRAMEF18Q5VWM3 479 aa19.26■□□□□ 0.67
CLN3-249ENST00000636685 EYA3Q99504 573 aa19.25■□□□□ 0.67
CLN3-249ENST00000636685 COLQQ9Y215 455 aaPredicted RBP19.25■□□□□ 0.67
CLN3-249ENST00000636685 PSME4Q14997 1843 aa19.24■□□□□ 0.67
CLN3-249ENST00000636685 EIF2S2P20042 333 aaKnown RBP19.24■□□□□ 0.67
CLN3-249ENST00000636685 TTLL12Q14166 644 aaPredicted RBP19.24■□□□□ 0.67
CLN3-249ENST00000636685 INTS3Q68E01 1043 aaKnown RBP19.24■□□□□ 0.67
CLN3-249ENST00000636685 TBC1D16Q8TBP0 767 aa19.24■□□□□ 0.67
CLN3-249ENST00000636685 CFHR5Q9BXR6 569 aa19.24■□□□□ 0.67
CLN3-249ENST00000636685 TRIM17Q9Y577 477 aa19.24■□□□□ 0.67
CLN3-249ENST00000636685 EN2P19622 333 aaPredicted RBP19.23■□□□□ 0.67
CLN3-249ENST00000636685 HSP90AB3PQ58FF7 597 aa19.23■□□□□ 0.67
CLN3-249ENST00000636685 SREBF2Q12772 1141 aa19.22■□□□□ 0.67
CLN3-249ENST00000636685 AIMP1Q12904 312 aaKnown RBP19.22■□□□□ 0.67
CLN3-249ENST00000636685 RSBN1LQ6PCB5 846 aaPredicted RBP19.22■□□□□ 0.67
CLN3-249ENST00000636685 OTOP1Q7RTM1 612 aa19.22■□□□□ 0.67
CLN3-249ENST00000636685 ZC3H12CQ9C0D7 883 aaKnown RBP19.22■□□□□ 0.67
CLN3-249ENST00000636685 MYOZ2Q9NPC6 264 aa19.22■□□□□ 0.67
CLN3-249ENST00000636685 PITPNM2Q9BZ72 1349 aa19.22■□□□□ 0.67
CLN3-249ENST00000636685 TCIRG1Q13488 830 aa19.21■□□□□ 0.67
CLN3-249ENST00000636685 COPS6Q7L5N1 327 aa19.21■□□□□ 0.67
CLN3-249ENST00000636685 AGBL3Q8NEM8 1001 aa19.21■□□□□ 0.67
CLN3-249ENST00000636685 ZNF609O15014 1411 aa19.2■□□□□ 0.66
CLN3-249ENST00000636685 G3V3G9 751 aa19.2■□□□□ 0.66
CLN3-249ENST00000636685 DCAF8Q5TAQ9 597 aa19.2■□□□□ 0.66
CLN3-249ENST00000636685 XAGE3Q8WTP9 111 aa19.2■□□□□ 0.66
CLN3-249ENST00000636685 USP17L8P0C7I0 530 aa19.19■□□□□ 0.66
CLN3-249ENST00000636685 PTPN12Q05209 780 aaKnown RBP19.19■□□□□ 0.66
CLN3-249ENST00000636685 SF3B3Q15393 1217 aaKnown RBP19.19■□□□□ 0.66
CLN3-249ENST00000636685 GMLQ99445 158 aa19.19■□□□□ 0.66
CLN3-249ENST00000636685 NECTIN2Q92692 538 aa19.18■□□□□ 0.66
CLN3-249ENST00000636685 CLSPNQ9HAW4 1339 aa19.18■□□□□ 0.66
CLN3-249ENST00000636685 DLL1O00548 723 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 UFL1O94874 794 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 PRKG1Q13976 671 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 NBPF9Q3BBW0 867 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 FAM89AQ96GI7 184 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 PTPN22Q9Y2R2 807 aa19.17■□□□□ 0.66
CLN3-249ENST00000636685 RPS8P62241 208 aaKnown RBP19.16■□□□□ 0.66
CLN3-249ENST00000636685 ALDH1A1P00352 501 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 PPP2R1AP30153 589 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 SPRYD7Q5W111 196 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 ARMC5Q96C12 935 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 PODXL2Q9NZ53 605 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 TSPYL4Q9UJ04 414 aa19.15■□□□□ 0.66
CLN3-249ENST00000636685 NF2P35240 595 aa19.14■□□□□ 0.65
CLN3-249ENST00000636685 RTL5Q5HYW3 569 aaPredicted RBP19.14■□□□□ 0.65
CLN3-249ENST00000636685 CD99L2Q8TCZ2 262 aa19.14■□□□□ 0.65
CLN3-249ENST00000636685 ANKIB1Q9P2G1 1089 aa19.14■□□□□ 0.65
CLN3-249ENST00000636685 GGA1Q9UJY5 639 aa19.14■□□□□ 0.65
CLN3-249ENST00000636685 NFE2L2Q16236 605 aa19.13■□□□□ 0.65
CLN3-249ENST00000636685 ARMC9Q7Z3E5 817 aa19.13■□□□□ 0.65
CLN3-249ENST00000636685 IFNL1Q8IU54 200 aa19.13■□□□□ 0.65
CLN3-249ENST00000636685 PCGF6Q9BYE7 350 aa19.13■□□□□ 0.65
CLN3-249ENST00000636685 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.13■□□□□ 0.65
CLN3-249ENST00000636685 USP17L3A6NCW0 530 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 USP17L4A6NCW7 530 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 H0YGN5 161 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 NEFMP07197 916 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 LDLRAD1Q5T700 205 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 USP17L1Q7RTZ2 530 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 OTUD5Q96G74 571 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 ERO1AQ96HE7 468 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 SEC31BQ9NQW1 1179 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 FZD1Q9UP38 647 aa19.12■□□□□ 0.65
CLN3-249ENST00000636685 ATP5J2-PTCD1G3V325 749 aa19.11■□□□□ 0.65
CLN3-249ENST00000636685 IGF2BP3O00425 579 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-249ENST00000636685 MXD3Q9BW11 206 aa19.11■□□□□ 0.65
CLN3-249ENST00000636685 ZNF646O15015 1829 aaPredicted RBP19.1■□□□□ 0.65
CLN3-249ENST00000636685 MANSC4A6NHS7 340 aaPredicted RBP19.1■□□□□ 0.65
CLN3-249ENST00000636685 WNT10BO00744 389 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 CAP1Q01518 475 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 SLC17A8Q8NDX2 589 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 PLEKHF1Q96S99 279 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 ISCA1Q9BUE6 129 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 TMEM106CQ9BVX2 250 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 EFCC1Q9HA90 598 aa19.1■□□□□ 0.65
CLN3-249ENST00000636685 ANGEL1Q9UNK9 670 aaKnown RBP19.1■□□□□ 0.65
CLN3-249ENST00000636685 LAMB1P07942 1786 aa19.09■□□□□ 0.65
CLN3-249ENST00000636685 CUL9Q8IWT3 2517 aa19.09■□□□□ 0.65
CLN3-249ENST00000636685 IRS4O14654 1257 aaPredicted RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms