RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CNNM1Q9NRU3 951 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 TLR7Q9NYK1 1049 aaKnown RBP12.85□□□□□ -0.35
CLN3-248ENST00000636355 ANKRD31Q8N7Z5 1873 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 PHF14O94880 888 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 PDE8BO95263 885 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 GYS1P13807 737 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 GTF2E1P29083 439 aaPredicted RBP12.84□□□□□ -0.35
CLN3-248ENST00000636355 NFIXQ14938 502 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 ATP2B3Q16720 1220 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 LRRFIP1Q32MZ4 808 aaKnown RBP12.84□□□□□ -0.35
CLN3-248ENST00000636355 ERFEQ4G0M1 354 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 CNBD1Q8NA66 436 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 RILPL2Q969X0 211 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 ZNF594Q96JF6 807 aaPredicted RBP12.84□□□□□ -0.35
CLN3-248ENST00000636355 NLRP3Q96P20 1036 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 MPHOSPH8Q99549 860 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 HAUS7Q99871 368 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 DBNDD2Q9BQY9 259 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 CCDC8Q9H0W5 538 aaPredicted RBP12.84□□□□□ -0.35
CLN3-248ENST00000636355 SNRKQ9NRH2 765 aa12.84□□□□□ -0.35
CLN3-248ENST00000636355 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.84□□□□□ -0.35
CLN3-248ENST00000636355 ZBTB22O15209 634 aa12.83□□□□□ -0.36
CLN3-248ENST00000636355 CCDC158Q5M9N0 1113 aa12.83□□□□□ -0.36
CLN3-248ENST00000636355 LPIN2Q92539 896 aa12.83□□□□□ -0.36
CLN3-248ENST00000636355 IL17RAQ96F46 866 aa12.83□□□□□ -0.36
CLN3-248ENST00000636355 PUS3Q9BZE2 481 aaKnown RBP12.83□□□□□ -0.36
CLN3-248ENST00000636355 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
CLN3-248ENST00000636355 MAST2Q6P0Q8 1798 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 SGSM2O43147 1006 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 MCCP23508 829 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 ANAPC15P60006 121 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 ST5P78524 1137 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 BECN1Q14457 450 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 ANKRD18AQ8IVF6 992 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 BCL11AQ9H165 835 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 BSDC1Q9NW68 430 aaPredicted RBP12.82□□□□□ -0.36
CLN3-248ENST00000636355 KIAA1551Q9HCM1 1747 aa12.82□□□□□ -0.36
CLN3-248ENST00000636355 MED23Q9ULK4 1368 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 SRCAPQ6ZRS2 3230 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 TAF1P21675 1872 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 COL4A1P02462 1669 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 UQCRFS1P1P0C7P4 283 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 SLC5A1P13866 664 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 FGFR2P21802 821 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 ARID4AP29374 1257 aaPredicted RBP12.81□□□□□ -0.36
CLN3-248ENST00000636355 TM4SF1P30408 202 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 CRY2Q49AN0 593 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 NLGN1Q8N2Q7 840 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 USP26Q9BXU7 913 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 TFCP2L1Q9NZI6 479 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 LTBP1Q14766 1721 aa12.81□□□□□ -0.36
CLN3-248ENST00000636355 COL11A2P13942 1736 aaPredicted RBP12.8□□□□□ -0.36
CLN3-248ENST00000636355 DLEC1Q9Y238 1755 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 FAM177BA6PVY3 158 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 NPHP1O15259 732 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 IFIT1P09914 478 aaKnown RBP12.8□□□□□ -0.36
CLN3-248ENST00000636355 SF3B2Q13435 895 aaKnown RBP12.8□□□□□ -0.36
CLN3-248ENST00000636355 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 GORABQ5T7V8 394 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 BICDL1Q6ZP65 573 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 KBTBD3Q8NAB2 608 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 XAGE2Q96GT9 111 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 NEUROD6Q96NK8 337 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 CCDC85AQ96PX6 553 aaPredicted RBP12.8□□□□□ -0.36
CLN3-248ENST00000636355 FSD1Q9BTV5 496 aa12.8□□□□□ -0.36
CLN3-248ENST00000636355 ZFYP08048 801 aaPredicted RBP12.79□□□□□ -0.36
CLN3-248ENST00000636355 BAG6P46379 1132 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 RABEP1Q15276 862 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 TTC39AQ5SRH9 613 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 PRR5LQ6MZQ0 368 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 DDX46Q7L014 1031 aaKnown RBP12.79□□□□□ -0.36
CLN3-248ENST00000636355 TMC4Q7Z404 712 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 CAMKK2Q96RR4 588 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 BOLA2Q9H3K6 86 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 PAG1Q9NWQ8 432 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 PDS5AQ29RF7 1337 aaKnown RBP12.79□□□□□ -0.36
CLN3-248ENST00000636355 PNPLA7Q6ZV29 1317 aa12.79□□□□□ -0.36
CLN3-248ENST00000636355 KLRG2A4D1S0 409 aaPredicted RBP12.78□□□□□ -0.36
CLN3-248ENST00000636355 POLRMTO00411 1230 aaKnown RBP12.78□□□□□ -0.36
CLN3-248ENST00000636355 IGSF3O75054 1194 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 UBE4AQ14139 1066 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 TTF1Q15361 905 aaPredicted RBP12.78□□□□□ -0.36
CLN3-248ENST00000636355 KIAA1211Q6ZU35 1233 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 SNX21Q969T3 373 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 ANKRD2Q9GZV1 360 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 SEC31BQ9NQW1 1179 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 ZNF804BA4D1E1 1349 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 LAMA4Q16363 1823 aa12.78□□□□□ -0.36
CLN3-248ENST00000636355 SERPINB2P05120 415 aa12.77□□□□□ -0.37
CLN3-248ENST00000636355 TIMM10P62072 90 aa12.77□□□□□ -0.37
CLN3-248ENST00000636355 RPS8P62241 208 aaKnown RBP12.77□□□□□ -0.37
CLN3-248ENST00000636355 CHRNDQ07001 517 aa12.77□□□□□ -0.37
CLN3-248ENST00000636355 GRAPQ13588 217 aa12.77□□□□□ -0.37
CLN3-248ENST00000636355 TMED8Q6PL24 325 aaPredicted RBP12.77□□□□□ -0.37
CLN3-248ENST00000636355 GRAPLQ8TC17 118 aaPredicted RBP12.77□□□□□ -0.37
CLN3-248ENST00000636355 ANO2Q9NQ90 1003 aa12.77□□□□□ -0.37
CLN3-248ENST00000636355 DAXXQ9UER7 740 aaPredicted RBP12.77□□□□□ -0.37
CLN3-248ENST00000636355 KIF13BQ9NQT8 1826 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 SEMA3EO15041 775 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 HOXA10P31260 410 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms