RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MINPP1Q9UNW1 487 aa26.01■■□□□ 1.75
CLN3-240ENST00000631023 DUOX1Q9NRD9 1551 aa26■■□□□ 1.75
CLN3-240ENST00000631023 FZD9O00144 591 aa26■■□□□ 1.75
CLN3-240ENST00000631023 EIF6P56537 245 aaKnown RBP26■■□□□ 1.75
CLN3-240ENST00000631023 KIAA2012Q0VF49 1180 aa26■■□□□ 1.75
CLN3-240ENST00000631023 WASHC4Q2M389 1173 aa26■■□□□ 1.75
CLN3-240ENST00000631023 TBC1D16Q8TBP0 767 aa26■■□□□ 1.75
CLN3-240ENST00000631023 CLUAP1Q96AJ1 413 aa26■■□□□ 1.75
CLN3-240ENST00000631023 RABL6Q3YEC7 729 aaPredicted RBP25.99■■□□□ 1.75
CLN3-240ENST00000631023 ANKRD2Q9GZV1 360 aa25.99■■□□□ 1.75
CLN3-240ENST00000631023 UFL1O94874 794 aa25.98■■□□□ 1.75
CLN3-240ENST00000631023 ATP2B4P23634 1241 aa25.98■■□□□ 1.75
CLN3-240ENST00000631023 FTSJ3Q8IY81 847 aaKnown RBP25.98■■□□□ 1.75
CLN3-240ENST00000631023 YTHDC1Q96MU7 727 aaKnown RBP25.98■■□□□ 1.75
CLN3-240ENST00000631023 ZC3H12CQ9C0D7 883 aaKnown RBP25.98■■□□□ 1.75
CLN3-240ENST00000631023 NMRK2Q9NPI5 230 aa25.98■■□□□ 1.75
CLN3-240ENST00000631023 RCAN3Q9UKA8 241 aa25.98■■□□□ 1.75
CLN3-240ENST00000631023 GNAI3P08754 354 aa25.97■■□□□ 1.75
CLN3-240ENST00000631023 RRAGCQ9HB90 399 aa25.97■■□□□ 1.75
CLN3-240ENST00000631023 COL4A5P29400 1685 aa25.97■■□□□ 1.75
CLN3-240ENST00000631023 DDNO94850 711 aaPredicted RBP25.96■■□□□ 1.75
CLN3-240ENST00000631023 LDHAL6AQ6ZMR3 332 aa25.96■■□□□ 1.75
CLN3-240ENST00000631023 ANKRD44Q8N8A2 993 aa25.96■■□□□ 1.75
CLN3-240ENST00000631023 ZNRF3Q9ULT6 936 aa25.96■■□□□ 1.75
CLN3-240ENST00000631023 TNNQ9UQP3 1299 aa25.96■■□□□ 1.75
CLN3-240ENST00000631023 WDR90Q96KV7 1748 aa25.96■■□□□ 1.75
CLN3-240ENST00000631023 RIMBP2O15034 1052 aa25.95■■□□□ 1.75
CLN3-240ENST00000631023 VEGFAP15692 232 aaPredicted RBP25.95■■□□□ 1.75
CLN3-240ENST00000631023 DZIP1LQ8IYY4 767 aaKnown RBP25.95■■□□□ 1.75
CLN3-240ENST00000631023 ZNF541Q9H0D2 1346 aa25.95■■□□□ 1.74
CLN3-240ENST00000631023 MEIS3Q99687 375 aa25.95■■□□□ 1.74
CLN3-240ENST00000631023 CNNM1Q9NRU3 951 aa25.95■■□□□ 1.74
CLN3-240ENST00000631023 G3V3G9 751 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 KIF3CO14782 793 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 DCAF8Q5TAQ9 597 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 GPC2Q8N158 579 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 ZNF594Q96JF6 807 aaPredicted RBP25.94■■□□□ 1.74
CLN3-240ENST00000631023 LEMD3Q9Y2U8 911 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 SCN4AP35499 1836 aa25.94■■□□□ 1.74
CLN3-240ENST00000631023 MS4A1P11836 297 aa25.93■■□□□ 1.74
CLN3-240ENST00000631023 CHRNDQ07001 517 aa25.93■■□□□ 1.74
CLN3-240ENST00000631023 C16orf71Q8IYS4 520 aaPredicted RBP25.93■■□□□ 1.74
CLN3-240ENST00000631023 TMEM57Q8N5G2 664 aa25.93■■□□□ 1.74
CLN3-240ENST00000631023 LRRFIP2Q9Y608 721 aaKnown RBP25.92■■□□□ 1.74
CLN3-240ENST00000631023 A0A1B0GUL6 1792 aa25.92■■□□□ 1.74
CLN3-240ENST00000631023 GPR101Q96P66 508 aaPredicted RBP25.91■■□□□ 1.74
CLN3-240ENST00000631023 KCNJ4P48050 445 aa25.9■■□□□ 1.74
CLN3-240ENST00000631023 L3MBTL3Q96JM7 780 aaPredicted RBP25.9■■□□□ 1.74
CLN3-240ENST00000631023 GJA3Q9Y6H8 435 aa25.9■■□□□ 1.74
CLN3-240ENST00000631023 IQCA1LA6NCM1 817 aa25.9■■□□□ 1.74
CLN3-240ENST00000631023 TNIP1Q15025 636 aa25.9■■□□□ 1.74
CLN3-240ENST00000631023 DBNDD1Q9H9R9 158 aa25.9■■□□□ 1.74
CLN3-240ENST00000631023 ZNF804BA4D1E1 1349 aa25.89■■□□□ 1.74
CLN3-240ENST00000631023 CXCL9Q07325 125 aa25.89■■□□□ 1.73
CLN3-240ENST00000631023 ECE2O60344 883 aa25.88■■□□□ 1.73
CLN3-240ENST00000631023 DOK7Q18PE1 504 aa25.88■■□□□ 1.73
CLN3-240ENST00000631023 CIAPIN1Q6FI81 312 aa25.88■■□□□ 1.73
CLN3-240ENST00000631023 ITPRIPQ8IWB1 547 aa25.88■■□□□ 1.73
CLN3-240ENST00000631023 MED23Q9ULK4 1368 aa25.87■■□□□ 1.73
CLN3-240ENST00000631023 TOMM70O94826 608 aa25.87■■□□□ 1.73
CLN3-240ENST00000631023 GNAI2P04899 355 aa25.87■■□□□ 1.73
CLN3-240ENST00000631023 POTECB2RU33 542 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 TAF5LO75529 589 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 RAD17O75943 681 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 RLBP1P12271 317 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 HELBQ8NG08 1087 aaPredicted RBP25.86■■□□□ 1.73
CLN3-240ENST00000631023 MROH5Q6ZUA9 1318 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 YDJCA8MPS7 323 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 PLIN1O60240 522 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.86■■□□□ 1.73
CLN3-240ENST00000631023 RIPOR2Q9Y4F9 1068 aa25.86■■□□□ 1.73
CLN3-240ENST00000631023 SCN9AQ15858 1988 aa25.85■■□□□ 1.73
CLN3-240ENST00000631023 WTIPA6NIX2 430 aaPredicted RBP25.85■■□□□ 1.73
CLN3-240ENST00000631023 LMOD1P29536 600 aaPredicted RBP25.85■■□□□ 1.73
CLN3-240ENST00000631023 PUS3Q9BZE2 481 aaKnown RBP25.85■■□□□ 1.73
CLN3-240ENST00000631023 C1QTNF8P60827 252 aa25.84■■□□□ 1.73
CLN3-240ENST00000631023 HACL1Q9UJ83 578 aa25.84■■□□□ 1.73
CLN3-240ENST00000631023 PSME4Q14997 1843 aa25.83■■□□□ 1.73
CLN3-240ENST00000631023 RFX5P48382 616 aaPredicted RBP25.83■■□□□ 1.73
CLN3-240ENST00000631023 PODNQ7Z5L7 613 aa25.83■■□□□ 1.73
CLN3-240ENST00000631023 KLHDC4Q8TBB5 520 aa25.83■■□□□ 1.73
CLN3-240ENST00000631023 PANK1Q8TE04 598 aa25.83■■□□□ 1.73
CLN3-240ENST00000631023 RBM46Q8TBY0 533 aaKnown RBP25.82■■□□□ 1.72
CLN3-240ENST00000631023 PTPN12Q05209 780 aaKnown RBP25.82■■□□□ 1.72
CLN3-240ENST00000631023 LRRC24Q50LG9 513 aa25.82■■□□□ 1.72
CLN3-240ENST00000631023 METTL24Q5JXM2 366 aa25.82■■□□□ 1.72
CLN3-240ENST00000631023 COA1Q9GZY4 146 aa25.82■■□□□ 1.72
CLN3-240ENST00000631023 FBXO3Q9UK99 471 aa25.82■■□□□ 1.72
CLN3-240ENST00000631023 EYA2O00167 538 aa25.81■■□□□ 1.72
CLN3-240ENST00000631023 ZBTB7BO15156 539 aaPredicted RBP25.81■■□□□ 1.72
CLN3-240ENST00000631023 MTX1Q13505 466 aa25.81■■□□□ 1.72
CLN3-240ENST00000631023 UBE4AQ14139 1066 aa25.81■■□□□ 1.72
CLN3-240ENST00000631023 C15orf52Q6ZUT6 534 aaKnown RBP25.81■■□□□ 1.72
CLN3-240ENST00000631023 TAF1DQ9H5J8 278 aaPredicted RBP25.81■■□□□ 1.72
CLN3-240ENST00000631023 PSMD14O00487 310 aa25.8■■□□□ 1.72
CLN3-240ENST00000631023 SRGAP3O43295 1099 aa25.8■■□□□ 1.72
CLN3-240ENST00000631023 TXNRD3Q86VQ6 643 aa25.8■■□□□ 1.72
CLN3-240ENST00000631023 EPHX2P34913 555 aa25.79■■□□□ 1.72
CLN3-240ENST00000631023 SCNN1DP51172 638 aa25.79■■□□□ 1.72
CLN3-240ENST00000631023 KCNQ5Q9NR82 932 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms