RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	FAM129B	Q96TA1	746 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	ANO2	Q9NQ90	1003 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	CCDC87	Q9NVE4	849 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	SALL4	Q9UJQ4	1053 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	TNFRSF21	O75509	655 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	NID1	P14543	1247 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	C8orf34	Q49A92	452 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	PERM1	Q5SV97	790 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	PSAPL1	Q6NUJ1	521 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	ELMSAN1	Q6PJG2	1045 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	SNX29	Q8TEQ0	813 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	ALKBH8	Q96BT7	664 aa	Known RBP	5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	SPACA7	Q96KW9	195 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	DMRTB1	Q96MA1	342 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	LPIN3	Q9BQK8	851 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	IGFLR1	Q9H665	355 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	TMEM63C	Q9P1W3	806 aa		5.67	□□□□□ -1.5
CNOT1-223	ENST00000628857	GHRH	P01286	108 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	IGHA2	P01877	340 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	AFF1	P51825	1210 aa	Known RBP	5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	RASSF7	Q02833	373 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	DTWD1	Q8N5C7	304 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	CEP120	Q8N960	986 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	MUC3B	Q9H195	1237 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	DNAJC25	Q9H1X3	360 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	DCTN4	Q9UJW0	460 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	NAGPA	Q9UK23	515 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	IVNS1ABP	Q9Y6Y0	642 aa		5.66	□□□□□ -1.5
CNOT1-223	ENST00000628857	CPB1	P15086	417 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	CES1	P23141	567 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	IRS1	P35568	1242 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	TBC1D8B	Q0IIM8	1120 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	GRIK5	Q16478	980 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	PLD4	Q96BZ4	506 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	TRIM11	Q96F44	468 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	PLVAP	Q9BX97	442 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	ZFYVE28	Q9HCC9	887 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	SRA1	Q9HD15	236 aa	Known RBP	5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	JPH1	Q9HDC5	661 aa	Predicted RBP	5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	CNTN3	Q9P232	1028 aa		5.65	□□□□□ -1.5
CNOT1-223	ENST00000628857	PHACTR2	O75167	634 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	SPATA31C1	P0DKV0	1188 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	EDN3	P14138	238 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	MSL1	Q68DK7	614 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	TMEM151A	Q8N4L1	468 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	C1orf127	Q8N9H9	656 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	DCAF11	Q8TEB1	546 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857	CHRD	Q9H2X0	955 aa		5.64	□□□□□ -1.51
CNOT1-223	ENST00000628857		J3QW42	95 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	SMNDC1	O75940	238 aa	Known RBP eCLIP	5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	EIF2AK2	P19525	551 aa	Known RBP	5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	PRRT3	Q5FWE3	981 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	NCAPG2	Q86XI2	1143 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	MAP4K3	Q8IVH8	894 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	DCAF5	Q96JK2	942 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	NSUN5	Q96P11	429 aa	Known RBP	5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	PBX4	Q9BYU1	374 aa		5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857	SMG9	Q9H0W8	520 aa	Known RBP	5.63	□□□□□ -1.51
CNOT1-223	ENST00000628857		A6NHS1	94 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	GDF11	O95390	407 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	CYP2E1	P05181	493 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	COL8A1	P27658	744 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	MLLT1	Q03111	559 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	TRIM28	Q13263	835 aa	Known RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	COL13A1	Q5TAT6	717 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	HFE2	Q6ZVN8	426 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	TMEM102	Q8N9M5	508 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	NUDT8	Q8WV74	236 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	ADAM19	Q9H013	955 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	DZANK1	Q9NVP4	752 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	BIN2	Q9UBW5	565 aa	Predicted RBP	5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	AMOTL2	Q9Y2J4	779 aa		5.62	□□□□□ -1.51
CNOT1-223	ENST00000628857	NFKBIE	O00221	500 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	EIF4EBP3	O60516	100 aa	Predicted RBP	5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	IGHA1	P01876	353 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	RAC1	P63000	192 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	DSC3	Q14574	896 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	COL19A1	Q14993	1142 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	TRAPPC3L	Q5T215	181 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	C8orf86	Q6ZUL3	223 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	WFDC8	Q8IUA0	241 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	HOMEZ	Q8IX15	550 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	GALNT12	Q8IXK2	581 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	ASB16	Q96NS5	453 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	NACC1	Q96RE7	527 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	SUV39H2	Q9H5I1	410 aa		5.61	□□□□□ -1.51
CNOT1-223	ENST00000628857	EREG	O14944	169 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	TREH	O43280	583 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	CPNE3	O75131	537 aa	Known RBP	5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	ELN	P15502	786 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	BAG6	P46379	1132 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	SND1	Q7KZF4	910 aa	Known RBP eCLIP	5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	TMC7	Q7Z402	723 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	FBXO11	Q86XK2	927 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	AEBP1	Q8IUX7	1158 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	WNT8B	Q93098	351 aa		5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857	FOXD3	Q9UJU5	478 aa	Predicted RBP	5.6	□□□□□ -1.51
CNOT1-223	ENST00000628857		A0A0A0MRY4	1105 aa		5.59	□□□□□ -1.51
CNOT1-223	ENST00000628857	GPR182	O15218	404 aa		5.59	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms