RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 SASH1O94885 1247 aa16.51■□□□□ 0.23
LDB3-209ENST00000623056 E4F1Q66K89 784 aaPredicted RBP16.51■□□□□ 0.23
LDB3-209ENST00000623056 CEP57L1Q8IYX8 460 aa16.51■□□□□ 0.23
LDB3-209ENST00000623056 BOLA2Q9H3K6 86 aa16.51■□□□□ 0.23
LDB3-209ENST00000623056 KINO60870 393 aaKnown RBP16.51■□□□□ 0.23
LDB3-209ENST00000623056 HOXB7P09629 217 aa16.51■□□□□ 0.23
LDB3-209ENST00000623056 PPP1R13BQ96KQ4 1090 aa16.51■□□□□ 0.23
LDB3-209ENST00000623056 TAF5LO75529 589 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 HSP90B1P14625 803 aaKnown RBP16.5■□□□□ 0.23
LDB3-209ENST00000623056 CDK11BP21127 795 aaKnown RBP16.5■□□□□ 0.23
LDB3-209ENST00000623056 HOXC9P31274 260 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 CYP2C19P33261 490 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 CLCN6P51797 869 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 CCDC93Q567U6 631 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 Q6ZUG5 572 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 ENGASEQ8NFI3 743 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 KRT32Q14532 448 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 SYT10Q6XYQ8 523 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 NEK1Q96PY6 1258 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 IMPACTQ9P2X3 320 aa16.5■□□□□ 0.23
LDB3-209ENST00000623056 ZNF142P52746 1687 aaPredicted RBP16.49■□□□□ 0.23
LDB3-209ENST00000623056 CEMIPQ8WUJ3 1361 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 FAM160A1Q05DH4 1040 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 NUTM2GQ5VZR2 741 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 USPL1Q5W0Q7 1092 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 ERCC4Q92889 916 aaPredicted RBP16.49■□□□□ 0.23
LDB3-209ENST00000623056 FBXW7Q969H0 707 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 SYTL4Q96C24 671 aaPredicted RBP16.49■□□□□ 0.23
LDB3-209ENST00000623056 LTV1Q96GA3 475 aaPredicted RBP16.49■□□□□ 0.23
LDB3-209ENST00000623056 MYH15Q9Y2K3 1946 aa16.49■□□□□ 0.23
LDB3-209ENST00000623056 KCNQ3O43525 872 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 ALDH1L1O75891 902 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 FOSBP53539 338 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 SCRN1Q12765 414 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 G3BP1Q13283 466 aaKnown RBP eCLIP16.48■□□□□ 0.23
LDB3-209ENST00000623056 SMARCC2Q8TAQ2 1214 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 NAT10Q9H0A0 1025 aaKnown RBP16.48■□□□□ 0.23
LDB3-209ENST00000623056 MAP3K2Q9Y2U5 619 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 VGLL3A8MV65 326 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 PNMA6AP0CW24 399 aaPredicted RBP16.48■□□□□ 0.23
LDB3-209ENST00000623056 NAA16Q6N069 864 aaPredicted RBP16.48■□□□□ 0.23
LDB3-209ENST00000623056 ARMCX5Q6P1M9 558 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 FSIP1Q8NA03 581 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 USP28Q96RU2 1077 aa16.48■□□□□ 0.23
LDB3-209ENST00000623056 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.48■□□□□ 0.23
LDB3-209ENST00000623056 PSDA5PKW4 1024 aaPredicted RBP16.47■□□□□ 0.23
LDB3-209ENST00000623056 TULP2O00295 520 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 ARHGAP29Q52LW3 1261 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 USHBP1Q8N6Y0 703 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 CCDC150Q8NCX0 1101 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 CHMP4AQ9BY43 222 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 RGPD8O14715 1765 aaPredicted RBP16.47■□□□□ 0.23
LDB3-209ENST00000623056 PIK3C2AO00443 1686 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 COL15A1P39059 1388 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 PLA2G4AP47712 749 aa16.47■□□□□ 0.23
LDB3-209ENST00000623056 CWF19L2Q2TBE0 894 aaKnown RBP16.47■□□□□ 0.23
LDB3-209ENST00000623056 TMC6Q7Z403 805 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 NGDNQ8NEJ9 315 aaKnown RBP16.46■□□□□ 0.23
LDB3-209ENST00000623056 EDC3Q96F86 508 aaKnown RBP16.46■□□□□ 0.23
LDB3-209ENST00000623056 LLPHQ9BRT6 129 aaKnown RBP16.46■□□□□ 0.23
LDB3-209ENST00000623056 LGR6Q9HBX8 967 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 CAPN2P17655 700 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 ME1P48163 572 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 NSUN7Q8NE18 718 aaKnown RBP16.46■□□□□ 0.23
LDB3-209ENST00000623056 KAZALD1Q96I82 304 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 SUCLG2Q96I99 432 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 LRRC2Q9BYS8 371 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 XPO4Q9C0E2 1151 aaKnown RBP16.46■□□□□ 0.23
LDB3-209ENST00000623056 HDAC5Q9UQL6 1122 aa16.46■□□□□ 0.23
LDB3-209ENST00000623056 MED1Q15648 1581 aaPredicted RBP16.46■□□□□ 0.22
LDB3-209ENST00000623056 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 SMC2O95347 1197 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 SFPQP23246 707 aaKnown RBP eCLIP16.45■□□□□ 0.22
LDB3-209ENST00000623056 HNRNPH2P55795 449 aaKnown RBP16.45■□□□□ 0.22
LDB3-209ENST00000623056 NLRP6P59044 892 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 ZNF396Q96N95 335 aaPredicted RBP16.45■□□□□ 0.22
LDB3-209ENST00000623056 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.45■□□□□ 0.22
LDB3-209ENST00000623056 PFKFB2O60825 505 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 ZRANB2O95218 330 aaKnown RBP eCLIP16.45■□□□□ 0.22
LDB3-209ENST00000623056 KCNJ6P48051 423 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 SLC20A2Q08357 652 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 SIL1Q9H173 461 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 BICC1Q9H694 974 aaKnown RBP16.45■□□□□ 0.22
LDB3-209ENST00000623056 IFNKQ9P0W0 207 aa16.45■□□□□ 0.22
LDB3-209ENST00000623056 DBF4Q9UBU7 674 aaPredicted RBP16.45■□□□□ 0.22
LDB3-209ENST00000623056 CTDNEP1O95476 244 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 ATL3Q6DD88 541 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 KSR2Q6VAB6 950 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 FMR1NBQ8N0W7 255 aaPredicted RBP16.44■□□□□ 0.22
LDB3-209ENST00000623056 PTPDC1A2A3K4 754 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 TUBB4AP04350 444 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 CYP21A2P08686 494 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 PROSER3Q2NL68 480 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 DPCR1Q3MIW9 517 aa16.44■□□□□ 0.22
LDB3-209ENST00000623056 DNAJC2Q99543 621 aaKnown RBP16.44■□□□□ 0.22
LDB3-209ENST00000623056 ORC3Q9UBD5 711 aaPredicted RBP16.44■□□□□ 0.22
LDB3-209ENST00000623056 GORABQ5T7V8 394 aa16.43■□□□□ 0.22
LDB3-209ENST00000623056 MRPS27Q92552 414 aaKnown RBP16.43■□□□□ 0.22
LDB3-209ENST00000623056 SDF4Q9BRK5 362 aa16.43■□□□□ 0.22
LDB3-209ENST00000623056 U3KPZ7 1027 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms