RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 LIG3P49916 1009 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 IRX1P78414 480 aaPredicted RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 NEDD9Q14511 834 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 MCM6Q14566 821 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 LRRFIP1Q32MZ4 808 aaKnown RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 NAIF1Q69YI7 327 aaPredicted RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 FUT8Q9BYC5 575 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 BSDC1Q9NW68 430 aaPredicted RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 PPFIA4O75335 1185 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ERCC3P19447 782 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 NF2P35240 595 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 MTHFSP49914 203 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ZNF662Q6ZS27 426 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 EPC1Q9H2F5 836 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 VEZTQ9HBM0 779 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 KCND1Q9NSA2 647 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 PPME1Q9Y570 386 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 MYOM2P54296 1465 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 CAVIN2O95810 425 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 C11orf91Q3C1V1 193 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 PDE11AQ9HCR9 933 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ANO2Q9NQ90 1003 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 FAM135BQ49AJ0 1406 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 TCHHQ07283 1943 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 PSDA5PKW4 1024 aaPredicted RBP9.16□□□□□ -0.94
VPS11-209ENST00000622309 ELF1P32519 619 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ETF1P62495 437 aaKnown RBP9.16□□□□□ -0.94
VPS11-209ENST00000622309 LONRF2Q1L5Z9 754 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ALDH1L2Q3SY69 923 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 JAKMIP3Q5VZ66 844 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 LRRC31Q6UY01 552 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 TMX4Q9H1E5 349 aaPredicted RBP9.16□□□□□ -0.94
VPS11-209ENST00000622309 ACBD3Q9H3P7 528 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 PLEKHA4Q9H4M7 779 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 DACT1Q9NYF0 836 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 ADGRB3O60242 1522 aa9.16□□□□□ -0.94
VPS11-209ENST00000622309 CCP110O43303 1012 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 TPD52L2O43399 206 aaKnown RBP9.15□□□□□ -0.94
VPS11-209ENST00000622309 KIF4AO95239 1232 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 RHBDL3P58872 404 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 OTUD7AQ8TE49 926 aaPredicted RBP9.15□□□□□ -0.94
VPS11-209ENST00000622309 STAG1Q8WVM7 1258 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 RTL1A6NKG5 1358 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 AATKQ6ZMQ8 1374 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 RGS12O14924 1447 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 KDM5AP29375 1690 aaKnown RBP9.15□□□□□ -0.94
VPS11-209ENST00000622309 APOBRQ0VD83 1088 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 PRAM1Q96QH2 718 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 DDX19AQ9NUU7 478 aaKnown RBP9.15□□□□□ -0.94
VPS11-209ENST00000622309 FAN1Q9Y2M0 1017 aa9.15□□□□□ -0.94
VPS11-209ENST00000622309 PHLPP2Q6ZVD8 1323 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 VPS37CA5D8V6 355 aaPredicted RBP9.15□□□□□ -0.95
VPS11-209ENST00000622309 C21orf2O43822 256 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 KRT85P78386 507 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 E4F1Q66K89 784 aaPredicted RBP9.15□□□□□ -0.95
VPS11-209ENST00000622309 SARM1Q6SZW1 724 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 N4BP2L2Q92802 583 aaPredicted RBP9.15□□□□□ -0.95
VPS11-209ENST00000622309 PARD6BQ9BYG5 372 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 DCTPP1Q9H773 170 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 PNMA2Q9UL42 364 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 PALD1Q9ULE6 856 aa9.15□□□□□ -0.95
VPS11-209ENST00000622309 SGSM2O43147 1006 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 MYBPC2Q14324 1141 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 PLEKHO1Q53GL0 409 aaPredicted RBP9.14□□□□□ -0.95
VPS11-209ENST00000622309 FBXW10Q5XX13 1052 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 AP1ARQ63HQ0 302 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 CTCFLQ8NI51 663 aaPredicted RBP9.14□□□□□ -0.95
VPS11-209ENST00000622309 CCDC102AQ96A19 550 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 GGNBP2Q9H3C7 697 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 LMTK2Q8IWU2 1503 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 HDXQ7Z353 690 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 TEX11Q8IYF3 940 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 CNNM3Q8NE01 707 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 KAT2BQ92831 832 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 ITFG2Q969R8 447 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 MYOM1P52179 1685 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 TTC41PQ6P2S7 1318 aa9.14□□□□□ -0.95
VPS11-209ENST00000622309 SFPQP23246 707 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS11-209ENST00000622309 PAX7P23759 505 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 POTEAQ6S8J7 498 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 FAXDC2Q96IV6 333 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 TRIM6Q9C030 488 aaPredicted RBP9.13□□□□□ -0.95
VPS11-209ENST00000622309 EVC2Q86UK5 1308 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 CPLX2Q6PUV4 134 aaKnown RBP9.13□□□□□ -0.95
VPS11-209ENST00000622309 NBPF3Q9H094 633 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 BICC1Q9H694 974 aaKnown RBP9.13□□□□□ -0.95
VPS11-209ENST00000622309 AKAP2Q9Y2D5 859 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 STRCP1A6NGW2 1772 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 CCDC151A5D8V7 595 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 GCFC2P16383 781 aaKnown RBP9.13□□□□□ -0.95
VPS11-209ENST00000622309 FBLN1P23142 703 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 SCRN1Q12765 414 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 BRD3Q15059 726 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 WAPLQ7Z5K2 1190 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 POTEDQ86YR6 584 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 CCDC150Q8NCX0 1101 aa9.13□□□□□ -0.95
VPS11-209ENST00000622309 RPGRIP1LQ68CZ1 1315 aa9.12□□□□□ -0.95
VPS11-209ENST00000622309 PHACTR2O75167 634 aa9.12□□□□□ -0.95
VPS11-209ENST00000622309 ERLIN1O75477 346 aa9.12□□□□□ -0.95
VPS11-209ENST00000622309 BICD2Q8TD16 824 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms