RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 USP31Q70CQ4 1352 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 A0A1W2PP55 124 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 KIF4AO95239 1232 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 USP17L7P0C7H9 530 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 ST13P50502 369 aaKnown RBP7.84□□□□□ -1.15
CPNE3-213ENST00000622183 TGIF2Q9GZN2 237 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 LATS2Q9NRM7 1088 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 TRAK1Q9UPV9 953 aa7.84□□□□□ -1.15
CPNE3-213ENST00000622183 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.84□□□□□ -1.15
CPNE3-213ENST00000622183 SNRPBP14678 240 aaKnown RBP7.83□□□□□ -1.16
CPNE3-213ENST00000622183 FGFR3P22607 806 aa7.83□□□□□ -1.16
CPNE3-213ENST00000622183 TAF1CQ15572 869 aaPredicted RBP7.83□□□□□ -1.16
CPNE3-213ENST00000622183 NAALADL2Q58DX5 795 aa7.83□□□□□ -1.16
CPNE3-213ENST00000622183 PRPF40BQ6NWY9 871 aaKnown RBP7.83□□□□□ -1.16
CPNE3-213ENST00000622183 GLIS3Q8NEA6 775 aa7.83□□□□□ -1.16
CPNE3-213ENST00000622183 BHMTQ93088 406 aa7.83□□□□□ -1.16
CPNE3-213ENST00000622183 IRX2Q9BZI1 471 aaPredicted RBP7.83□□□□□ -1.16
CPNE3-213ENST00000622183 GSTT1P30711 240 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 NRLP54845 237 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 PLAURQ03405 335 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 PTPN12Q05209 780 aaKnown RBP7.82□□□□□ -1.16
CPNE3-213ENST00000622183 HYAL2Q12891 473 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 NEUROD1Q13562 356 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 MEI1Q5TIA1 1274 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 FOXR1Q6PIV2 292 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 DHX32Q7L7V1 743 aaKnown RBP7.82□□□□□ -1.16
CPNE3-213ENST00000622183 TRERF1Q96PN7 1200 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 EHD4Q9H223 541 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 PPP4R2Q9NY27 417 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 USP35Q9P2H5 1018 aa7.82□□□□□ -1.16
CPNE3-213ENST00000622183 COL13A1Q5TAT6 717 aaPredicted RBP7.81□□□□□ -1.16
CPNE3-213ENST00000622183 RAB44Q7Z6P3 723 aaPredicted RBP7.81□□□□□ -1.16
CPNE3-213ENST00000622183 NCAPG2Q86XI2 1143 aa7.81□□□□□ -1.16
CPNE3-213ENST00000622183 C3orf58Q8NDZ4 430 aa7.81□□□□□ -1.16
CPNE3-213ENST00000622183 SREK1Q8WXA9 508 aaKnown RBP7.81□□□□□ -1.16
CPNE3-213ENST00000622183 CCSER2Q9H7U1 834 aa7.81□□□□□ -1.16
CPNE3-213ENST00000622183 PPFIA3O75145 1194 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 HS2ST1Q7LGA3 356 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 CEP120Q8N960 986 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 TRPM4Q8TD43 1214 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 CNTNAP3BQ96NU0 1288 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 TCF12Q99081 682 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 ZKSCAN3Q9BRR0 538 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 CNTNAP3Q9BZ76 1288 aa7.8□□□□□ -1.16
CPNE3-213ENST00000622183 C11orf95C9JLR9 678 aaPredicted RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 XRCC5P13010 732 aaKnown RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 GPLD1P80108 840 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 CTBSQ01459 385 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 CCNJLQ8IV13 435 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 ANKRD24Q8TF21 1146 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 NANOS1Q8WY41 292 aaKnown RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 NSUN5Q96P11 429 aaKnown RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 OSMRQ99650 979 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 LIN7BQ9HAP6 207 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 ABCB6Q9NP58 842 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 GGT7Q9UJ14 662 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 DDX41Q9UJV9 622 aaKnown RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 PPM1HQ9ULR3 514 aa7.79□□□□□ -1.16
CPNE3-213ENST00000622183 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.79□□□□□ -1.16
CPNE3-213ENST00000622183 TMEM238LA0A1B0GVL6 79 aa7.78□□□□□ -1.16
CPNE3-213ENST00000622183 CDC14CA4D256 554 aa7.78□□□□□ -1.16
CPNE3-213ENST00000622183 VWA5B2Q8N398 1253 aa7.78□□□□□ -1.16
CPNE3-213ENST00000622183 NOC4LQ9BVI4 516 aaKnown RBP7.78□□□□□ -1.16
CPNE3-213ENST00000622183 OXCT2Q9BYC2 517 aaPredicted RBP7.78□□□□□ -1.16
CPNE3-213ENST00000622183 DZANK1Q9NVP4 752 aa7.78□□□□□ -1.16
CPNE3-213ENST00000622183 PRR12Q9ULL5 1215 aa7.78□□□□□ -1.16
CPNE3-213ENST00000622183 GPR25O00155 361 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 ACPPP15309 386 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 FCGRTP55899 365 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 SF3A1Q15459 793 aaKnown RBP7.77□□□□□ -1.17
CPNE3-213ENST00000622183 PCSK7Q16549 785 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 ZNF468Q5VIY5 522 aaPredicted RBP7.77□□□□□ -1.17
CPNE3-213ENST00000622183 SV2AQ7L0J3 742 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 ERMP1Q7Z2K6 904 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 USP48Q86UV5 1035 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 ZNF654Q8IZM8 581 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 SPACA7Q96KW9 195 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 DRC1Q96MC2 740 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 TINF2Q9BSI4 451 aa7.77□□□□□ -1.17
CPNE3-213ENST00000622183 BHLHE41Q9C0J9 482 aaPredicted RBP7.77□□□□□ -1.17
CPNE3-213ENST00000622183 SRA1Q9HD15 236 aaKnown RBP7.77□□□□□ -1.17
CPNE3-213ENST00000622183 TTF2Q9UNY4 1162 aaKnown RBP7.77□□□□□ -1.17
CPNE3-213ENST00000622183 LOC102724428A0A0B4J2F2 783 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 SIN3BO75182 1162 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 SIK1P57059 783 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 ZNF394Q53GI3 561 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 SYT9Q86SS6 491 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 ACBD3Q9H3P7 528 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 ZFYVE1Q9HBF4 777 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 AVENQ9NQS1 362 aaPredicted RBP7.76□□□□□ -1.17
CPNE3-213ENST00000622183 PCDHGB7Q9Y5F8 929 aa7.76□□□□□ -1.17
CPNE3-213ENST00000622183 ZBTB42B2RXF5 422 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 NFKBIEO00221 500 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 C2CD2LO14523 706 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 BMP4P12644 408 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 RACK1P63244 317 aaKnown RBP7.75□□□□□ -1.17
CPNE3-213ENST00000622183 DTHD1Q6ZMT9 781 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 TMEM102Q8N9M5 508 aaPredicted RBP7.75□□□□□ -1.17
CPNE3-213ENST00000622183 SLC43A3Q8NBI5 491 aa7.75□□□□□ -1.17
CPNE3-213ENST00000622183 DNAJB12Q9NXW2 375 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms