RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 CCDC129Q6ZRS4 1044 aa23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 GOLPH3LQ9H4A5 285 aa23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 DBNLQ9UJU6 430 aaKnown RBP23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 U3KPZ7 1027 aaPredicted RBP23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 CTAGE5O15320 804 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 NEMFO60524 1076 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 CYP21A2P08686 494 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 CEBPZQ03701 1054 aaKnown RBP23■■□□□ 1.27
PDLIM3-212ENST00000620787 RCOR1Q9UKL0 485 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 NEURL1BA8MQ27 555 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 CHGBP05060 677 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 PLPPR3Q6T4P5 718 aa23■■□□□ 1.27
PDLIM3-212ENST00000620787 CCAR1Q8IX12 1150 aaKnown RBP23■■□□□ 1.27
PDLIM3-212ENST00000620787 FTOQ9C0B1 505 aaKnown RBP eCLIP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 PFKFB2O60825 505 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 SNW1Q13573 536 aaKnown RBP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 NAA16Q6N069 864 aaPredicted RBP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 NYAP1Q6ZVC0 841 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 RIC3Q7Z5B4 369 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 SEC62Q99442 399 aaKnown RBP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 LLPHQ9BRT6 129 aaKnown RBP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 LRRC2Q9BYS8 371 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 DDX41Q9UJV9 622 aaKnown RBP22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 NDUFB9Q9Y6M9 179 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 CAMTA1Q9Y6Y1 1673 aa22.99■■□□□ 1.27
PDLIM3-212ENST00000620787 DHX40Q8IX18 779 aaKnown RBP22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 NSUN7Q8NE18 718 aaKnown RBP22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 GCKRQ14397 625 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 TNNI3KQ59H18 835 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 STOX1Q6ZVD7 989 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 KCNH5Q8NCM2 988 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 COPRSQ9NQ92 184 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 FPGT-TNNI3KV9GXZ4 949 aa22.98■■□□□ 1.27
PDLIM3-212ENST00000620787 CCZ1BP86790 482 aa22.97■■□□□ 1.27
PDLIM3-212ENST00000620787 CCZ1P86791 482 aaPredicted RBP22.97■■□□□ 1.27
PDLIM3-212ENST00000620787 ZNF592Q92610 1267 aa22.97■■□□□ 1.27
PDLIM3-212ENST00000620787 CTDNEP1O95476 244 aa22.97■■□□□ 1.27
PDLIM3-212ENST00000620787 ENGASEQ8NFI3 743 aa22.97■■□□□ 1.27
PDLIM3-212ENST00000620787 AFDNP55196 1824 aaKnown RBP22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 SKILP12757 684 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 RFX5P48382 616 aaPredicted RBP22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 USP16Q9Y5T5 823 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 FOSBP53539 338 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 TFCP2Q12800 502 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 MCMDC2Q4G0Z9 681 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 THEMISQ8N1K5 641 aaPredicted RBP22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 USP28Q96RU2 1077 aa22.96■■□□□ 1.27
PDLIM3-212ENST00000620787 A0A087WWV3 80 aa22.95■■□□□ 1.26
PDLIM3-212ENST00000620787 CCDC69A6NI79 296 aa22.95■■□□□ 1.26
PDLIM3-212ENST00000620787 NEXNQ0ZGT2 675 aa22.95■■□□□ 1.26
PDLIM3-212ENST00000620787 CCDC73Q6ZRK6 1079 aa22.95■■□□□ 1.26
PDLIM3-212ENST00000620787 IGSF3O75054 1194 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 PTPN12Q05209 780 aaKnown RBP22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 PTPN14Q15678 1187 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 DNAJC2Q99543 621 aaKnown RBP22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 LMTK3Q96Q04 1460 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 PTPDC1A2A3K4 754 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 BECN2A8MW95 431 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 KIF18AQ8NI77 898 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 ANO10Q9NW15 660 aa22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 MORC2Q9Y6X9 1032 aaPredicted RBP22.94■■□□□ 1.26
PDLIM3-212ENST00000620787 FAM160A1Q05DH4 1040 aa22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 MYD88Q99836 296 aa22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 HAUS7Q99871 368 aa22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 ABCC6O95255 1503 aa22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 KINO60870 393 aaKnown RBP22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 METTL22Q9BUU2 404 aaPredicted RBP22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 ZNF215Q9UL58 517 aaPredicted RBP22.93■■□□□ 1.26
PDLIM3-212ENST00000620787 FGD1P98174 961 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 APOBRQ0VD83 1088 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 ATL3Q6DD88 541 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 DHX32Q7L7V1 743 aaKnown RBP22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 FILIP1Q7Z7B0 1213 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 XAGE3Q8WTP9 111 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 DBNDD2Q9BQY9 259 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 KCND1Q9NSA2 647 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 SALL1Q9NSC2 1324 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 GABPB1Q06547 395 aaPredicted RBP22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 CCAR2Q8N163 923 aaKnown RBP22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 SH3TC1Q8TE82 1336 aa22.92■■□□□ 1.26
PDLIM3-212ENST00000620787 HMGB1P09429 215 aaKnown RBP22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 MYL6BP14649 208 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 DDX46Q7L014 1031 aaKnown RBP22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 ILDR1Q86SU0 546 aaPredicted RBP22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 FSIP1Q8NA03 581 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 ZNF396Q96N95 335 aaPredicted RBP22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 SCN11AQ9UI33 1791 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 ARHGEF25Q86VW2 580 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 AOPEPQ8N6M6 819 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 ZNF397Q8NF99 534 aaPredicted RBP22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 ANKRD24Q8TF21 1146 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 AGXT2Q9BYV1 514 aa22.91■■□□□ 1.26
PDLIM3-212ENST00000620787 EXOSC10Q01780 885 aaKnown RBP22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 KMT5BQ4FZB7 885 aa22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 CEP57L1Q8IYX8 460 aa22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 BCL11BQ9C0K0 894 aaPredicted RBP22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 PSME1Q06323 249 aa22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 COPS6Q7L5N1 327 aa22.9■■□□□ 1.26
PDLIM3-212ENST00000620787 TRMT1Q9NXH9 659 aaKnown RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms