RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 YTHDC2Q9H6S0 1430 aaKnown RBP13.05□□□□□ -0.32
CLIP1-219ENST00000620786 STX6O43752 255 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 CCDC91Q7Z6B0 441 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 MTERF4Q7Z6M4 381 aaKnown RBP13.05□□□□□ -0.32
CLIP1-219ENST00000620786 MRPL50Q8N5N7 158 aaKnown RBP13.05□□□□□ -0.32
CLIP1-219ENST00000620786 IP6K1Q92551 441 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 ARHGAP45Q92619 1136 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 COMMD10Q9Y6G5 202 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 KIAA0754O94854 1291 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 LUZP1Q86V48 1076 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 ZNF408Q9H9D4 720 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 POLKQ9UBT6 870 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 EIF2AK4Q9P2K8 1649 aaKnown RBP13.05□□□□□ -0.32
CLIP1-219ENST00000620786 KIAA0556O60303 1618 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 PHACTR2O75167 634 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 UFL1O94874 794 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 CWF19L2Q2TBE0 894 aaKnown RBP13.04□□□□□ -0.32
CLIP1-219ENST00000620786 TTC16Q8NEE8 873 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 CCDC113Q9H0I3 377 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 SPDYE3A6NKU9 549 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 HOOK3Q86VS8 718 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 PLCD3Q8N3E9 789 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 CCDC102AQ96A19 550 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 RTL9Q8NET4 1388 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 STAT6P42226 847 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 ATP8B2P98198 1209 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 NUP160Q12769 1436 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 GOLGA6L7A0A1B0GV03 622 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 SSFA2P28290 1259 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 EYA1Q99502 592 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 SYNCQ9H7C4 482 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 DDX19AQ9NUU7 478 aaKnown RBP13.04□□□□□ -0.32
CLIP1-219ENST00000620786 NCBP1Q09161 790 aaKnown RBP13.04□□□□□ -0.32
CLIP1-219ENST00000620786 BMP2KLQ5H9B9 411 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 ISM2Q6H9L7 571 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 C6orf50Q9HD87 102 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 CLIP2Q9UDT6 1046 aa13.04□□□□□ -0.32
CLIP1-219ENST00000620786 RMND1Q9NWS8 449 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 USP21Q9UK80 565 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 TFCP2Q12800 502 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 STX1AQ16623 288 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 RBM25P49756 843 aaKnown RBP13.03□□□□□ -0.32
CLIP1-219ENST00000620786 LINS1Q8NG48 757 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 TRIM47Q96LD4 638 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 SBNO2Q9Y2G9 1366 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 TMCO5BA8MYB1 307 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 RNF113AO15541 343 aaKnown RBP13.03□□□□□ -0.32
CLIP1-219ENST00000620786 USP37Q86T82 979 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 ZNF354CQ86Y25 554 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 RBM8AQ9Y5S9 174 aaKnown RBP13.03□□□□□ -0.32
CLIP1-219ENST00000620786 CCDC102BQ68D86 513 aa13.03□□□□□ -0.32
CLIP1-219ENST00000620786 SAP30BPQ9UHR5 308 aaKnown RBP13.03□□□□□ -0.32
CLIP1-219ENST00000620786 ADAMTS12P58397 1594 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 TMX1Q9H3N1 280 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 PICK1Q9NRD5 415 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 KRT13P13646 458 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 NMIQ13287 307 aaPredicted RBP13.02□□□□□ -0.32
CLIP1-219ENST00000620786 KIF4BQ2VIQ3 1234 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 Q6ZUG5 572 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 ALS2CR12Q96Q35 445 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 FERMT1Q9BQL6 677 aa13.02□□□□□ -0.32
CLIP1-219ENST00000620786 NECAB1Q8N987 351 aa13.02□□□□□ -0.33
CLIP1-219ENST00000620786 DYDC1Q8WWB3 177 aa13.02□□□□□ -0.33
CLIP1-219ENST00000620786 TBC1D5Q92609 795 aa13.02□□□□□ -0.33
CLIP1-219ENST00000620786 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.33
CLIP1-219ENST00000620786 BMP15O95972 392 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 EIF6P56537 245 aaKnown RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 NUCB1Q02818 461 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 PSMD1Q99460 953 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 TBX22Q9Y458 520 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 PABPN1LA6NDY0 278 aaKnown RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 RRAGBQ5VZM2 374 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 GDPD2Q9HCC8 539 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 TMOD4Q9NZQ9 345 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 DENND2AQ9ULE3 1009 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 ZBTB21Q9ULJ3 1066 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 ZFYVE9O95405 1425 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 PRAG1Q86YV5 1406 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 H0YIN7 160 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 APBA3O96018 575 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 SDSP20132 328 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 AFMP43652 599 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 PRPF4BQ13523 1007 aaKnown RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 NOP2P46087 812 aaKnown RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 RBM10P98175 930 aaKnown RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 TCHPQ9BT92 498 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 RAB3GAP1Q15042 981 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 ZSCAN16Q9H4T2 348 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-219ENST00000620786 SH2D4AQ9H788 454 aa13.01□□□□□ -0.33
CLIP1-219ENST00000620786 FAM212AQ96EL1 285 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 PAFAH1B1P43034 410 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 LMAN1P49257 510 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 PDE1AP54750 535 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 IFFO1Q0D2I5 559 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 BICC1Q9H694 974 aaKnown RBP13□□□□□ -0.33
CLIP1-219ENST00000620786 GGA1Q9UJY5 639 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 PTPN14Q15678 1187 aa13□□□□□ -0.33
CLIP1-219ENST00000620786 PARP10Q53GL7 1025 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms