RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 FAM155AB1AL88 458 aaPredicted RBP11.12□□□□□ -0.63
GPC6-202ENST00000617456 C6orf229H3BNL8 230 aa11.12□□□□□ -0.63
GPC6-202ENST00000617456 TCIRG1Q13488 830 aa11.12□□□□□ -0.63
GPC6-202ENST00000617456 DOK7Q18PE1 504 aa11.12□□□□□ -0.63
GPC6-202ENST00000617456 NSFL1CQ9UNZ2 370 aaKnown RBP11.12□□□□□ -0.63
GPC6-202ENST00000617456 DDX10Q13206 875 aaKnown RBP11.11□□□□□ -0.63
GPC6-202ENST00000617456 DPF2Q92785 391 aa11.11□□□□□ -0.63
GPC6-202ENST00000617456 CCDC102AQ96A19 550 aa11.11□□□□□ -0.63
GPC6-202ENST00000617456 KCNQ5Q9NR82 932 aa11.11□□□□□ -0.63
GPC6-202ENST00000617456 RNF186Q9NXI6 227 aa11.11□□□□□ -0.63
GPC6-202ENST00000617456 SAGE1Q9NXZ1 904 aa11.11□□□□□ -0.63
GPC6-202ENST00000617456 TAF1P21675 1872 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 TNRC18O15417 2968 aaPredicted RBP11.1□□□□□ -0.63
GPC6-202ENST00000617456 ECE2O60344 883 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 RIPK4P57078 832 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 GPSM2P81274 684 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 KIF4BQ2VIQ3 1234 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 RTL5Q5HYW3 569 aaPredicted RBP11.1□□□□□ -0.63
GPC6-202ENST00000617456 TMC4Q7Z404 712 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 CELF1Q92879 486 aaKnown RBP11.1□□□□□ -0.63
GPC6-202ENST00000617456 POLLQ9UGP5 575 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 LAMB2P55268 1798 aa11.1□□□□□ -0.63
GPC6-202ENST00000617456 POLR2AP24928 1970 aaKnown RBP11.1□□□□□ -0.63
GPC6-202ENST00000617456 ASTN2O75129 1339 aaPredicted RBP11.09□□□□□ -0.63
GPC6-202ENST00000617456 DUOX1Q9NRD9 1551 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 RTL9Q8NET4 1388 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 SLC10A3P09131 477 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 RPS12P25398 132 aaKnown RBP11.09□□□□□ -0.63
GPC6-202ENST00000617456 TMPOP42166 694 aaKnown RBP11.09□□□□□ -0.63
GPC6-202ENST00000617456 TAF7LQ5H9L4 462 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 SULF1Q8IWU6 871 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 RUNDC1Q96C34 613 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 CDCA5Q96FF9 252 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 FAM89AQ96GI7 184 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 CSRNP1Q96S65 589 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 GGA3Q9NZ52 723 aa11.09□□□□□ -0.63
GPC6-202ENST00000617456 ATP5J2-PTCD1G3V325 749 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 G3V3G9 751 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 KRT24Q2M2I5 525 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 DCAF8Q5TAQ9 597 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 CTU1Q7Z7A3 348 aaKnown RBP11.08□□□□□ -0.64
GPC6-202ENST00000617456 EYA3Q99504 573 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 PRKRIP1Q9H875 184 aaPredicted RBP11.08□□□□□ -0.64
GPC6-202ENST00000617456 CHPF2Q9P2E5 772 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 LAS1LQ9Y4W2 734 aaKnown RBP11.08□□□□□ -0.64
GPC6-202ENST00000617456 ANKRD36CQ5JPF3 1778 aa11.08□□□□□ -0.64
GPC6-202ENST00000617456 HOXB7P09629 217 aa11.07□□□□□ -0.64
GPC6-202ENST00000617456 FGD1P98174 961 aa11.07□□□□□ -0.64
GPC6-202ENST00000617456 WDR43Q15061 677 aaKnown RBP eCLIP11.07□□□□□ -0.64
GPC6-202ENST00000617456 TBC1D16Q8TBP0 767 aa11.07□□□□□ -0.64
GPC6-202ENST00000617456 CHMP4AQ9BY43 222 aa11.07□□□□□ -0.64
GPC6-202ENST00000617456 CHL1O00533 1208 aa11.06□□□□□ -0.64
GPC6-202ENST00000617456 UFL1O94874 794 aa11.06□□□□□ -0.64
GPC6-202ENST00000617456 VIL1P09327 827 aaKnown RBP11.06□□□□□ -0.64
GPC6-202ENST00000617456 SCARF1Q14162 830 aa11.06□□□□□ -0.64
GPC6-202ENST00000617456 SF3B3Q15393 1217 aaKnown RBP11.06□□□□□ -0.64
GPC6-202ENST00000617456 ANGEL2Q5VTE6 544 aaKnown RBP11.06□□□□□ -0.64
GPC6-202ENST00000617456 RASAL3Q86YV0 1011 aa11.06□□□□□ -0.64
GPC6-202ENST00000617456 PLBD2Q8NHP8 589 aa11.06□□□□□ -0.64
GPC6-202ENST00000617456 ZC3H12CQ9C0D7 883 aaKnown RBP11.06□□□□□ -0.64
GPC6-202ENST00000617456 SCAF8Q9UPN6 1271 aaKnown RBP11.06□□□□□ -0.64
GPC6-202ENST00000617456 IRS4O14654 1257 aaPredicted RBP11.05□□□□□ -0.64
GPC6-202ENST00000617456 RPS8P62241 208 aaKnown RBP11.05□□□□□ -0.64
GPC6-202ENST00000617456 CALD1Q05682 793 aaKnown RBP11.05□□□□□ -0.64
GPC6-202ENST00000617456 NEUROD2Q15784 382 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 HDGFL1Q5TGJ6 251 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 PRPF38BQ5VTL8 546 aaKnown RBP11.05□□□□□ -0.64
GPC6-202ENST00000617456 ANKRD13DQ6ZTN6 518 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 MOB2Q70IA6 237 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 ISCA1Q9BUE6 129 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 ANKIB1Q9P2G1 1089 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 HDAC9Q9UKV0 1011 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 HPS5Q9UPZ3 1129 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 AKAP11Q9UKA4 1901 aa11.05□□□□□ -0.64
GPC6-202ENST00000617456 LRRC37AA6NMS7 1700 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 TULP1O00294 542 aaPredicted RBP11.04□□□□□ -0.64
GPC6-202ENST00000617456 TBC1D8O95759 1140 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 CCDC146Q8IYE0 955 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 SEC31BQ9NQW1 1179 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 GGA1Q9UJY5 639 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 ADAMTS8Q9UP79 889 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 COL4A1P02462 1669 aa11.04□□□□□ -0.64
GPC6-202ENST00000617456 UBE2Q2LH0YL09 131 aa11.03□□□□□ -0.64
GPC6-202ENST00000617456 MKRN3Q13064 507 aaKnown RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 TTLL12Q14166 644 aaPredicted RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 PRAMEF18Q5VWM3 479 aa11.03□□□□□ -0.64
GPC6-202ENST00000617456 RSBN1LQ6PCB5 846 aaPredicted RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 REM2Q8IYK8 340 aaPredicted RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 ZNF296Q8WUU4 475 aaPredicted RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 CCDC85AQ96PX6 553 aaPredicted RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 TRIM35Q9UPQ4 493 aa11.03□□□□□ -0.64
GPC6-202ENST00000617456 DDX60Q8IY21 1712 aaKnown RBP11.03□□□□□ -0.64
GPC6-202ENST00000617456 ZNF280AP59817 542 aaPredicted RBP11.02□□□□□ -0.65
GPC6-202ENST00000617456 AGBL3Q8NEM8 1001 aa11.02□□□□□ -0.65
GPC6-202ENST00000617456 JARID2Q92833 1246 aaPredicted RBP11.02□□□□□ -0.65
GPC6-202ENST00000617456 MYOZ2Q9NPC6 264 aa11.02□□□□□ -0.65
GPC6-202ENST00000617456 SCN9AQ15858 1988 aa11.02□□□□□ -0.65
GPC6-202ENST00000617456 USP17L8P0C7I0 530 aa11.01□□□□□ -0.65
GPC6-202ENST00000617456 FKBP1BP68106 108 aa11.01□□□□□ -0.65
GPC6-202ENST00000617456 PKN2Q16513 984 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms