RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, human

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MMP28-206	ENST00000616383	MSL1	Q68DK7	614 aa		13.63	□□□□□ -0.23
MMP28-206	ENST00000616383	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.63	□□□□□ -0.23
MMP28-206	ENST00000616383	CHMP3	Q9Y3E7	222 aa		13.63	□□□□□ -0.23
MMP28-206	ENST00000616383	RIC1	Q4ADV7	1423 aa		13.63	□□□□□ -0.23
MMP28-206	ENST00000616383	COL11A2	P13942	1736 aa	Predicted RBP	13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	POLRMT	O00411	1230 aa	Known RBP	13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	HSP90B1	P14625	803 aa	Known RBP	13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	TPTE2	Q6XPS3	522 aa		13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	CNBD1	Q8NA66	436 aa		13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	GCC1	Q96CN9	775 aa		13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	DCTPP1	Q9H773	170 aa		13.62	□□□□□ -0.23
MMP28-206	ENST00000616383	COL4A1	P02462	1669 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	NPHP1	O15259	732 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	SERPINB2	P05120	415 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	CSF1R	P07333	972 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	RFX5	P48382	616 aa	Predicted RBP	13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	FAM161A	Q3B820	660 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	PRR5L	Q6MZQ0	368 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	CCDC24	Q8N4L8	307 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	PA2G4	Q9UQ80	394 aa	Known RBP	13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	EXOC6B	Q9Y2D4	811 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	CACNA1S	Q13698	1873 aa		13.61	□□□□□ -0.23
MMP28-206	ENST00000616383	MMP10	P09238	476 aa		13.6	□□□□□ -0.23
MMP28-206	ENST00000616383	SLC10A5	Q5PT55	438 aa		13.6	□□□□□ -0.23
MMP28-206	ENST00000616383	TTLL11	Q8NHH1	800 aa		13.6	□□□□□ -0.23
MMP28-206	ENST00000616383	GREM2	Q9H772	168 aa		13.6	□□□□□ -0.23
MMP28-206	ENST00000616383	RTL9	Q8NET4	1388 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	APBB1	O00213	710 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	SNPH	O15079	494 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	SURF6	O75683	361 aa	Known RBP	13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	ST5	P78524	1137 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	C3orf67	Q6ZVT6	689 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	KLHDC4	Q8TBB5	520 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	PDZRN3	Q9UPQ7	1066 aa		13.59	□□□□□ -0.23
MMP28-206	ENST00000616383	KIF13B	Q9NQT8	1826 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	PTPN12	Q05209	780 aa	Known RBP	13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	OS9	Q13438	667 aa	Predicted RBP	13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	R3HDM1	Q15032	1099 aa	Known RBP	13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	CCDC57	Q2TAC2	916 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	CCDC152	Q4G0S7	254 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	SLC16A10	Q8TF71	515 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	SIL1	Q9H173	461 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	COPRS	Q9NQ92	184 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	NOP58	Q9Y2X3	529 aa	Known RBP	13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	PARP3	Q9Y6F1	533 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	DLEC1	Q9Y238	1755 aa		13.58	□□□□□ -0.24
MMP28-206	ENST00000616383	ANKRD18B	A2A2Z9	1011 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	ITGA6	P23229	1130 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	NUCB1	Q02818	461 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	IFIT5	Q13325	482 aa	Known RBP	13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	SF3B3	Q15393	1217 aa	Known RBP	13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	HSP90AB4P	Q58FF6	505 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	IFFO2	Q5TF58	517 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	ANKRD45	Q5TZF3	282 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	SKAP1	Q86WV1	359 aa		13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	ZNF594	Q96JF6	807 aa	Predicted RBP	13.57	□□□□□ -0.24
MMP28-206	ENST00000616383	ARAP2	Q8WZ64	1704 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	RAB11FIP3	O75154	756 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	MKRN3	Q13064	507 aa	Known RBP	13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	GSE1	Q14687	1217 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	TAF7L	Q5H9L4	462 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	CHD1L	Q86WJ1	897 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	NLRP3	Q96P20	1036 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	LRRCC1	Q9C099	1032 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	LNPK	Q9C0E8	428 aa		13.56	□□□□□ -0.24
MMP28-206	ENST00000616383	SMARCA5	O60264	1052 aa	Predicted RBP	13.55	□□□□□ -0.24
MMP28-206	ENST00000616383	ERC1	Q8IUD2	1116 aa		13.55	□□□□□ -0.24
MMP28-206	ENST00000616383	SEC31B	Q9NQW1	1179 aa		13.55	□□□□□ -0.24
MMP28-206	ENST00000616383	LRRC37A	A6NMS7	1700 aa		13.55	□□□□□ -0.24
MMP28-206	ENST00000616383	EYA2	O00167	538 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	ZBTB7A	O95365	584 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	RHPN1	Q8TCX5	695 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	KIF1BP	Q96EK5	621 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	BCL11A	Q9H165	835 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	C10orf71	Q711Q0	1435 aa		13.54	□□□□□ -0.24
MMP28-206	ENST00000616383	KIAA1551	Q9HCM1	1747 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	CIAO1	O76071	339 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	SASH1	O94885	1247 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	PDE4A	P27815	886 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	RGS3	P49796	1198 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	LRRC24	Q50LG9	513 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	ATG9A	Q7Z3C6	839 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	PUS3	Q9BZE2	481 aa	Known RBP	13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	IL1RAPL2	Q9NP60	686 aa		13.53	□□□□□ -0.24
MMP28-206	ENST00000616383	AK9	Q5TCS8	1911 aa		13.52	□□□□□ -0.24
MMP28-206	ENST00000616383	IL15	P40933	162 aa	Predicted RBP	13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	CRY2	Q49AN0	593 aa		13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	RPGR	Q92834	1020 aa	Known RBP	13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	CDC5L	Q99459	802 aa	Known RBP	13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	BRIP1	Q9BX63	1249 aa		13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	MTFR1L	Q9H019	292 aa		13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	CNNM1	Q9NRU3	951 aa		13.52	□□□□□ -0.25
MMP28-206	ENST00000616383	ZNF609	O15014	1411 aa		13.51	□□□□□ -0.25
MMP28-206	ENST00000616383	IGHMBP2	P38935	993 aa	Known RBP	13.51	□□□□□ -0.25
MMP28-206	ENST00000616383	TFCP2	Q12800	502 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms