RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CCDC40Q4G0X9 1142 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 ESR2Q92731 530 aa16.08■□□□□ 0.16
CPSF1-212ENST00000616140 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.08■□□□□ 0.16
CPSF1-212ENST00000616140 ITSN2Q9NZM3 1697 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 AMPD3Q01432 767 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 HS1BP3Q53T59 392 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.07■□□□□ 0.162e-6■■■■□ 20
CPSF1-212ENST00000616140 V9GYY5 206 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-212ENST00000616140 USP8P40818 1118 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 DHX32Q7L7V1 743 aaKnown RBP16.07■□□□□ 0.16
CPSF1-212ENST00000616140 PAF1Q8N7H5 531 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 SMARCC1Q92922 1105 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-212ENST00000616140 KRT23Q9C075 422 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 CCDC113Q9H0I3 377 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 SHTN1A0MZ66 631 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 PTPDC1A2A3K4 754 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 AKR1B10O60218 316 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 HLTFQ14527 1009 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF1-212ENST00000616140 TMTC2Q8N394 836 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 PLCD4Q9BRC7 762 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 UHRF1BP1Q6BDS2 1440 aa16.07■□□□□ 0.16
CPSF1-212ENST00000616140 BAG3O95817 575 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 TRIM21P19474 475 aaKnown RBP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 PTGS1P23219 599 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 CCDC178Q5BJE1 867 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 RUFY3Q7L099 469 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 SLC4A4Q9Y6R1 1079 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 SBNO2Q9Y2G9 1366 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 MATR3P43243 847 aaKnown RBP eCLIP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 SPECC1Q5M775 1068 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 TRMT1LQ7Z2T5 733 aaKnown RBP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 RPGRQ92834 1020 aaKnown RBP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 PYM1Q9BRP8 204 aaKnown RBP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 JADE2Q9NQC1 790 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 MAP3K5Q99683 1374 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 ZFYVE9O95405 1425 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 TFCP2Q12800 502 aa16.06■□□□□ 0.16
CPSF1-212ENST00000616140 SPTY2D1Q68D10 685 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-212ENST00000616140 FAM173BQ6P4H8 233 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 RBSNQ9H1K0 784 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 ZNF518AQ6AHZ1 1483 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 TEX14Q8IWB6 1497 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 RRAGBQ5VZM2 374 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 CABLES1Q8TDN4 633 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 BICC1Q9H694 974 aaKnown RBP16.05■□□□□ 0.16
CPSF1-212ENST00000616140 CNNM2Q9H8M5 875 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 EIF2AK4Q9P2K8 1649 aaKnown RBP16.05■□□□□ 0.16
CPSF1-212ENST00000616140 MYO1BO43795 1136 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 IL13P35225 146 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 CCDC152Q4G0S7 254 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 CALCOCO1Q9P1Z2 691 aa16.05■□□□□ 0.16
CPSF1-212ENST00000616140 RTL1A6NKG5 1358 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 TMCO5BA8MYB1 307 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 CHL1O00533 1208 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 GCP02774 474 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 IFIT1BQ5T764 474 aaKnown RBP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 SLF2Q8IX21 1173 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 HELBQ8NG08 1087 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 CRNKL1Q9BZJ0 848 aaKnown RBP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 IFFO1Q0D2I5 559 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 DYDC1Q8WWB3 177 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 ALS2CR12Q96Q35 445 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 DDX21Q9NR30 783 aaKnown RBP eCLIP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 BMP15O95972 392 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 CETN2P41208 172 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 DTNBO60941 627 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 LIG1P18858 919 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 NOP2P46087 812 aaKnown RBP16.04■□□□□ 0.16
CPSF1-212ENST00000616140 TNIP1Q15025 636 aa16.04■□□□□ 0.16
CPSF1-212ENST00000616140 MACROD2A1Z1Q3 448 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 TRIM75PA6NK02 468 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 POTEB2H3BUK9 544 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 RNF113AO15541 343 aaKnown RBP16.03■□□□□ 0.16
CPSF1-212ENST00000616140 KRT222Q8N1A0 295 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 LMAN1P49257 510 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 WDR62O43379 1518 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 ABCC1P33527 1531 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 TIMM10P62072 90 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 SPAG1Q07617 926 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 NGLY1Q96IV0 654 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 ARFGAP3Q9NP61 516 aa16.03■□□□□ 0.16
CPSF1-212ENST00000616140 RAD50Q92878 1312 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 RXRAP19793 462 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 HOXC9P31274 260 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 DHX58Q96C10 678 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 GSTTP1A0A1W2PQM5 241 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 FAM114A1Q8IWE2 563 aa16.02■□□□□ 0.16
CPSF1-212ENST00000616140 SHANK2Q9UPX8 1470 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 PNMA6EA0A0J9YXQ4 647 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 CUL5Q93034 780 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 POTEJP0CG39 1038 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 ANKRD18AQ8IVF6 992 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 KLHDC4Q8TBB5 520 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 UBE2Q2Q8WVN8 375 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 NAA15Q9BXJ9 866 aaKnown RBP16.02■□□□□ 0.15
CPSF1-212ENST00000616140 RRAGDQ9NQL2 400 aaPredicted RBP16.02■□□□□ 0.15
CPSF1-212ENST00000616140 IFNKQ9P0W0 207 aa16.02■□□□□ 0.15
CPSF1-212ENST00000616140 BCCIPQ9P287 314 aaKnown RBP eCLIP16.02■□□□□ 0.15
CPSF1-212ENST00000616140 YTHDC2Q9H6S0 1430 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms