RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 STAG1Q8WVM7 1258 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 GDPD2Q9HCC8 539 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 NRBP1Q9UHY1 535 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 AXIN2Q9Y2T1 843 aa11.92□□□□□ -0.5
VPS39-214ENST00000614932 A0A087WUV0 522 aaPredicted RBP11.91□□□□□ -0.5
VPS39-214ENST00000614932 TAF7Q15545 349 aaPredicted RBP11.91□□□□□ -0.5
VPS39-214ENST00000614932 JAKMIP3Q5VZ66 844 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 NAIF1Q69YI7 327 aaPredicted RBP11.91□□□□□ -0.5
VPS39-214ENST00000614932 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.91□□□□□ -0.5
VPS39-214ENST00000614932 CABLES1Q8TDN4 633 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 IP6K1Q92551 441 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 L2HGDHQ9H9P8 463 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 ANKARQ7Z5J8 1434 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 KIAA0232Q92628 1395 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 HSPA2P54652 639 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 ANAPC15P60006 121 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 RGPD1P0DJD0 1748 aa11.91□□□□□ -0.5
VPS39-214ENST00000614932 RTL1A6NKG5 1358 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 MAP3K5Q99683 1374 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 NEBLO76041 1014 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 IPO7O95373 1038 aaKnown RBP11.9□□□□□ -0.5
VPS39-214ENST00000614932 HDGFL1Q5TGJ6 251 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 ZNF530Q6P9A1 599 aaPredicted RBP11.9□□□□□ -0.5
VPS39-214ENST00000614932 PLEKHM2Q8IWE5 1019 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 ANKRD44Q8N8A2 993 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 TMEM87AQ8NBN3 555 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 CACTINQ8WUQ7 758 aaKnown RBP11.9□□□□□ -0.5
VPS39-214ENST00000614932 DCTPP1Q9H773 170 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 SGSM2O43147 1006 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 CASC1Q6TDU7 716 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 KRT28Q7Z3Y7 464 aa11.9□□□□□ -0.5
VPS39-214ENST00000614932 FMN2Q9NZ56 1722 aa11.9□□□□□ -0.51
VPS39-214ENST00000614932 USP27XA6NNY8 438 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 MICALL1Q8N3F8 863 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 GNL3LQ9NVN8 582 aaKnown RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 NPHP4O75161 1426 aaPredicted RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 PRAMEF22A3QJZ6 481 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 TBC1D8O95759 1140 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 CCDC30Q5VVM6 783 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 GIMAP6Q6P9H5 292 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 FOXR1Q6PIV2 292 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 FMNL3Q8IVF7 1028 aa11.89□□□□□ -0.51
VPS39-214ENST00000614932 ZNF526Q8TF50 670 aaPredicted RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 PAIP2Q9BPZ3 127 aaKnown RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 NUCKS1Q9H1E3 243 aaKnown RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 ORC3Q9UBD5 711 aaPredicted RBP11.89□□□□□ -0.51
VPS39-214ENST00000614932 CWC27Q6UX04 472 aaKnown RBP11.88□□□□□ -0.51
VPS39-214ENST00000614932 GBP6Q6ZN66 633 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 FAM200AQ8TCP9 573 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 PNMA6EA0A0J9YXQ4 647 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 NEMFO60524 1076 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 SASH3O75995 380 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 SEC31AO94979 1220 aaKnown RBP11.88□□□□□ -0.51
VPS39-214ENST00000614932 CCDC192P0DO97 292 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 ERC1Q8IUD2 1116 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 ANKRD24Q8TF21 1146 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 UBXN4Q92575 508 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 SRRTQ9BXP5 876 aaKnown RBP11.88□□□□□ -0.51
VPS39-214ENST00000614932 ATP10DQ9P241 1426 aa11.88□□□□□ -0.51
VPS39-214ENST00000614932 HNRNPH1P31943 449 aaKnown RBP11.87□□□□□ -0.51
VPS39-214ENST00000614932 ZNF75DP51815 510 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 UBE2HP62256 183 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 TEFQ10587 303 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 SLC24A3Q9HC58 644 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 A1CFQ9NQ94 594 aaKnown RBP11.87□□□□□ -0.51
VPS39-214ENST00000614932 ETAA1Q9NY74 926 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 ELF1P32519 619 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 FOXD4L6Q3SYB3 417 aaPredicted RBP11.87□□□□□ -0.51
VPS39-214ENST00000614932 FOXD4L3Q6VB84 417 aaPredicted RBP11.87□□□□□ -0.51
VPS39-214ENST00000614932 PLA2G4DQ86XP0 818 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 TATDN2Q93075 761 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 CHPF2Q9P2E5 772 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS39-214ENST00000614932 ADGRL3Q9HAR2 1447 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 NWD1Q149M9 1564 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 BTBD11A6QL63 1104 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 ANKRD65E5RJM6 399 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 CHRNA2Q15822 529 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 CCDC93Q567U6 631 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 RPAP2Q8IXW5 612 aaPredicted RBP11.87□□□□□ -0.51
VPS39-214ENST00000614932 FAM107BQ9H098 131 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 PRDM16Q9HAZ2 1276 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 RPS6KL1Q9Y6S9 549 aa11.87□□□□□ -0.51
VPS39-214ENST00000614932 EIF5P55010 431 aaKnown RBP11.86□□□□□ -0.51
VPS39-214ENST00000614932 ADCY2Q08462 1091 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 AP1ARQ63HQ0 302 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 TEX11Q8IYF3 940 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 KCNH5Q8NCM2 988 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 LRRN4CLQ8ND94 238 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 CCDC34Q96HJ3 373 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 TRIM5Q9C035 493 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 ERLIN2O94905 339 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 RBM5P52756 815 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS39-214ENST00000614932 NEDD9Q14511 834 aa11.86□□□□□ -0.51
VPS39-214ENST00000614932 CHD2O14647 1828 aaKnown RBP11.86□□□□□ -0.51
VPS39-214ENST00000614932 MARF1Q9Y4F3 1742 aaKnown RBP11.85□□□□□ -0.51
VPS39-214ENST00000614932 GNAI2P04899 355 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 CCT4P50991 539 aaKnown RBP11.85□□□□□ -0.51
VPS39-214ENST00000614932 LRRC8AQ8IWT6 810 aa11.85□□□□□ -0.51
VPS39-214ENST00000614932 TMX3Q96JJ7 454 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms