RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 SOGA3Q5TF21 947 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 AQRO60306 1485 aaKnown RBP eCLIP9.93□□□□□ -0.82
TTC28-208ENST00000612946 GKAP1Q5VSY0 366 aaPredicted RBP9.93□□□□□ -0.82
TTC28-208ENST00000612946 STK26Q9P289 416 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 ODF2LQ9ULJ1 636 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 ARHGAP6O43182 974 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 CCDC68Q9H2F9 335 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 THOC2Q8NI27 1593 aaKnown RBP9.93□□□□□ -0.82
TTC28-208ENST00000612946 FAM135AQ9P2D6 1515 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 MAGEA9P43362 315 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 TBC1D9Q6ZT07 1266 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 RRP15Q9Y3B9 282 aaKnown RBP9.93□□□□□ -0.82
TTC28-208ENST00000612946 ACTN4O43707 911 aaKnown RBP9.93□□□□□ -0.82
TTC28-208ENST00000612946 SLFNL1Q499Z3 407 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 CCDC152Q4G0S7 254 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 GDAP1L1Q96MZ0 367 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 ACTR5Q9H9F9 607 aaPredicted RBP9.93□□□□□ -0.82
TTC28-208ENST00000612946 BICDL2A1A5D9 508 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 PEG3Q9GZU2 1588 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 SAFB2Q14151 953 aaKnown RBP eCLIP9.93□□□□□ -0.82
TTC28-208ENST00000612946 CENPKQ9BS16 269 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.93□□□□□ -0.822e-7■□□□□ 11.2
TTC28-208ENST00000612946 TBC1D5Q92609 795 aa9.93□□□□□ -0.82
TTC28-208ENST00000612946 PAK2Q13177 524 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 N4BP3O15049 544 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 MUM1Q2TAK8 710 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 NUTM2DQ5VT03 806 aaPredicted RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 NUTM2AQ8IVF1 878 aaPredicted RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 BCL2L12Q9HB09 334 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 PRC1O43663 620 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 SYKP43405 635 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 MAP7D1Q3KQU3 841 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 GEMIN8Q9NWZ8 242 aaKnown RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 GMNNO75496 209 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 MTIF2P46199 727 aaKnown RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 RNASELQ05823 741 aaKnown RBP9.92□□□□□ -0.82
TTC28-208ENST00000612946 DRC3Q9H069 523 aa9.92□□□□□ -0.82
TTC28-208ENST00000612946 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.92□□□□□ -0.82
TTC28-208ENST00000612946 ITGB1BP2Q9UKP3 347 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 ZMYM4Q5VZL5 1548 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 GTF2E1P29083 439 aaPredicted RBP9.91□□□□□ -0.82
TTC28-208ENST00000612946 NUCB1Q02818 461 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 SMC1BQ8NDV3 1235 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 RABGGTAQ92696 567 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 CCDC51Q96ER9 411 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 CAPN7Q9Y6W3 813 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 RFC1P35251 1148 aaPredicted RBP9.91□□□□□ -0.82
TTC28-208ENST00000612946 ELF2Q15723 593 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 TTC22Q5TAA0 569 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 USP37Q86T82 979 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 U2AF2P26368 475 aaKnown RBP eCLIP9.91□□□□□ -0.82
TTC28-208ENST00000612946 RTL1A6NKG5 1358 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 WDHD1O75717 1129 aaPredicted RBP9.91□□□□□ -0.82
TTC28-208ENST00000612946 ARHGAP45Q92619 1136 aa9.91□□□□□ -0.82
TTC28-208ENST00000612946 ZNF131P52739 623 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 CCDC14Q49A88 953 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 CSRNP2Q9H175 543 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 ELL2O00472 640 aaPredicted RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 F13A1P00488 732 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 NGDNQ8NEJ9 315 aaKnown RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 KIF14Q15058 1648 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 FGD5Q6ZNL6 1462 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 BRAPQ7Z569 592 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 USP48Q86UV5 1035 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 BAG1Q99933 345 aaPredicted RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 CFAP43Q8NDM7 1665 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 SMIM24O75264 130 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 BCAR3O75815 825 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 ZFXP17010 805 aaPredicted RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 GJB2P29033 226 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 EXOSC9Q06265 439 aaKnown RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 FCHSD2O94868 740 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 TDRD12Q587J7 1177 aaKnown RBP9.9□□□□□ -0.82
TTC28-208ENST00000612946 CNKSR2Q8WXI2 1034 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 SPAG5Q96R06 1193 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 ASXL1Q8IXJ9 1541 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 SLC4A8Q2Y0W8 1093 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 ARAP1Q96P48 1450 aa9.9□□□□□ -0.82
TTC28-208ENST00000612946 RARSP54136 660 aaKnown RBP9.9□□□□□ -0.83
TTC28-208ENST00000612946 PTGS1P23219 599 aa9.9□□□□□ -0.83
TTC28-208ENST00000612946 VWA3BQ502W6 1294 aa9.9□□□□□ -0.83
TTC28-208ENST00000612946 ATP2C2O75185 946 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 C8orf34Q49A92 452 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 FBXO41Q8TF61 875 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 NCAPGQ9BPX3 1015 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 TRIM6Q9C030 488 aaPredicted RBP9.89□□□□□ -0.83
TTC28-208ENST00000612946 CTNNA2P26232 953 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 CDC25BP30305 580 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 RIC3Q7Z5B4 369 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 RNF41Q9H4P4 317 aaPredicted RBP9.89□□□□□ -0.83
TTC28-208ENST00000612946 AFAP1L2Q8N4X5 818 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 AKR1B15C9JRZ8 316 aaPredicted RBP9.89□□□□□ -0.83
TTC28-208ENST00000612946 MGEA5O60502 916 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 PPP2R5AQ15172 486 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 NBPF10Q6P3W6 841 aaKnown RBP9.89□□□□□ -0.83
TTC28-208ENST00000612946 CYP26C1Q6V0L0 522 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 ARHGAP18Q8N392 663 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 NEUROD6Q96NK8 337 aa9.89□□□□□ -0.83
TTC28-208ENST00000612946 RABEP2Q9H5N1 569 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms