RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 HIRAP54198 1017 aaPredicted RBP8.16□□□□□ -1.1
CUX1-220ENST00000607092 RPS8P62241 208 aaKnown RBP8.16□□□□□ -1.1
CUX1-220ENST00000607092 FMR1Q06787 632 aaKnown RBP eCLIP8.16□□□□□ -1.1
CUX1-220ENST00000607092 C1QBPQ07021 282 aaKnown RBP8.16□□□□□ -1.1
CUX1-220ENST00000607092 GOLGA2Q08379 1002 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 AGBL3Q8NEM8 1001 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 TRPM4Q8TD43 1214 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 DLG5Q8TDM6 1919 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 PODXL2Q9NZ53 605 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 ZNF609O15014 1411 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 PITPNM2Q9BZ72 1349 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 IRS4O14654 1257 aaPredicted RBP8.15□□□□□ -1.1
CUX1-220ENST00000607092 ECE2O60344 883 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 VIL1P09327 827 aaKnown RBP8.15□□□□□ -1.1
CUX1-220ENST00000607092 NF2P35240 595 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 PLCB2Q00722 1185 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 WDR43Q15061 677 aaKnown RBP eCLIP8.15□□□□□ -1.1
CUX1-220ENST00000607092 KIF4BQ2VIQ3 1234 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 CCDC152Q4G0S7 254 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 TBC1D10BQ4KMP7 808 aaPredicted RBP8.15□□□□□ -1.1
CUX1-220ENST00000607092 RUNDC1Q96C34 613 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 ISCA1Q9BUE6 129 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 CHPF2Q9P2E5 772 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 ANKIB1Q9P2G1 1089 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 TSKSQ9UJT2 592 aa8.15□□□□□ -1.1
CUX1-220ENST00000607092 LRRC37AA6NMS7 1700 aa8.15□□□□□ -1.11
CUX1-220ENST00000607092 DDX60Q8IY21 1712 aaKnown RBP8.15□□□□□ -1.11
CUX1-220ENST00000607092 XDHP47989 1333 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 MYO3BQ8WXR4 1341 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 YDJCA8MPS7 323 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 RIMBP2O15034 1052 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 DDX58O95786 925 aaKnown RBP8.14□□□□□ -1.11
CUX1-220ENST00000607092 ANXA1P04083 346 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 SLC10A3P09131 477 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 KIF23Q02241 960 aaPredicted RBP8.14□□□□□ -1.11
CUX1-220ENST00000607092 PROSER3Q2NL68 480 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 SAMD7Q7Z3H4 446 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 RIC3Q7Z5B4 369 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 PODNQ7Z5L7 613 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 CTU1Q7Z7A3 348 aaKnown RBP8.14□□□□□ -1.11
CUX1-220ENST00000607092 OGFOD1Q8N543 542 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 ZBTB38Q8NAP3 1195 aaPredicted RBP8.14□□□□□ -1.11
CUX1-220ENST00000607092 CCDC191Q8NCU4 936 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 TBC1D16Q8TBP0 767 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 FAM89AQ96GI7 184 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 DBNDD1Q9H9R9 158 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 GGA1Q9UJY5 639 aa8.14□□□□□ -1.11
CUX1-220ENST00000607092 ZBTB12Q9Y330 459 aaPredicted RBP8.14□□□□□ -1.11
CUX1-220ENST00000607092 FAM155AB1AL88 458 aaPredicted RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 UFL1O94874 794 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 USP17L8P0C7I0 530 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 ZNF280AP59817 542 aaPredicted RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 GPSM2P81274 684 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 NOM1Q5C9Z4 860 aaKnown RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 RBM26Q5T8P6 1007 aaKnown RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 RSBN1LQ6PCB5 846 aaPredicted RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 CELF1Q92879 486 aaKnown RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 CDC5LQ99459 802 aaKnown RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 RNF186Q9NXI6 227 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 GGA3Q9NZ52 723 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 POLLQ9UGP5 575 aa8.13□□□□□ -1.11
CUX1-220ENST00000607092 LAS1LQ9Y4W2 734 aaKnown RBP8.13□□□□□ -1.11
CUX1-220ENST00000607092 MYBBP1AQ9BQG0 1328 aaKnown RBP8.12□□□□□ -1.11
CUX1-220ENST00000607092 PDE8AO60658 829 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 TRPA1O75762 1119 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 ALDH1A1P00352 501 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 PCCAP05165 728 aaPredicted RBP8.12□□□□□ -1.11
CUX1-220ENST00000607092 ATP2B4P23634 1241 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 GNAI1P63096 354 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 SREBF2Q12772 1141 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 ANKRD18AQ8IVF6 992 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 CDCA5Q96FF9 252 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 CWC25Q9NXE8 425 aaPredicted RBP8.12□□□□□ -1.11
CUX1-220ENST00000607092 HDAC9Q9UKV0 1011 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 DUOX1Q9NRD9 1551 aa8.12□□□□□ -1.11
CUX1-220ENST00000607092 CASP8AP2Q9UKL3 1982 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 USP17L3A6NCW0 530 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 USP17L4A6NCW7 530 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 ADM5C9JUS6 153 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 ATP5J2-PTCD1G3V325 749 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 INHBEP58166 350 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 NEXNQ0ZGT2 675 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 NEUROD2Q15784 382 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 DOK7Q18PE1 504 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 ANGEL2Q5VTE6 544 aaKnown RBP8.11□□□□□ -1.11
CUX1-220ENST00000607092 PRPF38BQ5VTL8 546 aaKnown RBP8.11□□□□□ -1.11
CUX1-220ENST00000607092 DUSP27Q5VZP5 1158 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 USP17L1Q7RTZ2 530 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 GCC1Q96CN9 775 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 CSRNP1Q96S65 589 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 MYOZ2Q9NPC6 264 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 LAMB2P55268 1798 aa8.11□□□□□ -1.11
CUX1-220ENST00000607092 RTL9Q8NET4 1388 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 UNCXA6NJT0 531 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 SCARF1Q14162 830 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 CCDC30Q5VVM6 783 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 RASAL3Q86YV0 1011 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 IFT57Q9NWB7 429 aa8.1□□□□□ -1.11
CUX1-220ENST00000607092 TNRC18O15417 2968 aaPredicted RBP8.1□□□□□ -1.11
CUX1-220ENST00000607092 MED23Q9ULK4 1368 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms