RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-216	ENST00000601816	RTL9	Q8NET4	1388 aa		33.19	■■■□□ 2.9
PNKP-216	ENST00000601816	UFL1	O94874	794 aa		33.18	■■■□□ 2.9
PNKP-216	ENST00000601816	ADARB2	Q9NS39	739 aa	Known RBP	33.18	■■■□□ 2.9
PNKP-216	ENST00000601816	MYH3	P11055	1940 aa		33.18	■■■□□ 2.9
PNKP-216	ENST00000601816		F6X3S4	739 aa		33.17	■■■□□ 2.9
PNKP-216	ENST00000601816	PLA2G12B	Q9BX93	195 aa		33.17	■■■□□ 2.9
PNKP-216	ENST00000601816	ZC3H12C	Q9C0D7	883 aa	Known RBP	33.17	■■■□□ 2.9
PNKP-216	ENST00000601816	ECE2	O60344	883 aa		33.15	■■■□□ 2.9
PNKP-216	ENST00000601816	XDH	P47989	1333 aa		33.15	■■■□□ 2.9
PNKP-216	ENST00000601816	CASP7	P55210	303 aa		33.15	■■■□□ 2.9
PNKP-216	ENST00000601816	DOK7	Q18PE1	504 aa		33.15	■■■□□ 2.9
PNKP-216	ENST00000601816		E9PSI1	815 aa		33.13	■■■□□ 2.89
PNKP-216	ENST00000601816	BEND3	Q5T5X7	828 aa		33.13	■■■□□ 2.89
PNKP-216	ENST00000601816	TMEM88B	A6NKF7	163 aa		33.12	■■■□□ 2.89
PNKP-216	ENST00000601816		G3V3G9	751 aa		33.12	■■■□□ 2.89
PNKP-216	ENST00000601816	CCER2	I3L3R5	266 aa		33.12	■■■□□ 2.89
PNKP-216	ENST00000601816	DCAF8	Q5TAQ9	597 aa		33.12	■■■□□ 2.89
PNKP-216	ENST00000601816	BSDC1	Q9NW68	430 aa	Predicted RBP	33.12	■■■□□ 2.89
PNKP-216	ENST00000601816	PSMD14	O00487	310 aa		33.11	■■■□□ 2.89
PNKP-216	ENST00000601816	ATP2B4	P23634	1241 aa		33.11	■■■□□ 2.89
PNKP-216	ENST00000601816	CNOT7	Q9UIV1	285 aa	Known RBP	33.1	■■■□□ 2.89
PNKP-216	ENST00000601816	IGHMBP2	P38935	993 aa	Known RBP	33.09	■■■□□ 2.89
PNKP-216	ENST00000601816	FAM161A	Q3B820	660 aa		33.09	■■■□□ 2.89
PNKP-216	ENST00000601816	MKRN1	Q9UHC7	482 aa	Known RBP	33.09	■■■□□ 2.89
PNKP-216	ENST00000601816	MINPP1	Q9UNW1	487 aa		33.09	■■■□□ 2.89
PNKP-216	ENST00000601816	ZBTB12	Q9Y330	459 aa	Predicted RBP	33.09	■■■□□ 2.89
PNKP-216	ENST00000601816	SPEF2	Q9C093	1822 aa		33.08	■■■□□ 2.89
PNKP-216	ENST00000601816		H7C1D1	291 aa		33.08	■■■□□ 2.89
PNKP-216	ENST00000601816	CSF1R	P07333	972 aa		33.08	■■■□□ 2.89
PNKP-216	ENST00000601816	ITGA6	P23229	1130 aa		33.08	■■■□□ 2.89
PNKP-216	ENST00000601816	DPF2	Q92785	391 aa		33.08	■■■□□ 2.89
PNKP-216	ENST00000601816	MICALL2	Q8IY33	904 aa		33.07	■■■□□ 2.88
PNKP-216	ENST00000601816	KCNQ5	Q9NR82	932 aa		33.07	■■■□□ 2.88
PNKP-216	ENST00000601816	SLFN5	Q08AF3	891 aa		33.06	■■■□□ 2.88
PNKP-216	ENST00000601816	SHTN1	A0MZ66	631 aa		33.05	■■■□□ 2.88
PNKP-216	ENST00000601816	RPS12	P25398	132 aa	Known RBP	33.05	■■■□□ 2.88
PNKP-216	ENST00000601816	SLC4A10	Q6U841	1118 aa		33.05	■■■□□ 2.88
PNKP-216	ENST00000601816	TRPM4	Q8TD43	1214 aa		33.05	■■■□□ 2.88
PNKP-216	ENST00000601816	CNTNAP1	P78357	1384 aa		33.05	■■■□□ 2.88
PNKP-216	ENST00000601816	GRM8	O00222	908 aa		33.04	■■■□□ 2.88
PNKP-216	ENST00000601816	MPHOSPH8	Q99549	860 aa		33.04	■■■□□ 2.88
PNKP-216	ENST00000601816	ALDH1L1	O75891	902 aa		33.03	■■■□□ 2.88
PNKP-216	ENST00000601816	MED23	Q9ULK4	1368 aa		33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	ANKRD18B	A2A2Z9	1011 aa		33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	CCT4	P50991	539 aa	Known RBP	33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	HIRA	P54198	1017 aa	Predicted RBP	33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	FOXO4	P98177	505 aa		33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	MRPL50	Q8N5N7	158 aa	Known RBP	33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	ZC3H15	Q8WU90	426 aa	Known RBP	33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	SRCIN1	Q9C0H9	1055 aa		33.02	■■■□□ 2.88
PNKP-216	ENST00000601816	VIL1	P09327	827 aa	Known RBP	33.01	■■■□□ 2.87
PNKP-216	ENST00000601816	C9orf78	Q9NZ63	289 aa	Predicted RBP	33.01	■■■□□ 2.87
PNKP-216	ENST00000601816	PGAP2	Q9UHJ9	254 aa		33.01	■■■□□ 2.87
PNKP-216	ENST00000601816	SCN9A	Q15858	1988 aa		33	■■■□□ 2.87
PNKP-216	ENST00000601816	TRAF5	O00463	557 aa		33	■■■□□ 2.87
PNKP-216	ENST00000601816	CDCA7L	Q96GN5	454 aa		33	■■■□□ 2.87
PNKP-216	ENST00000601816	ANKRD2	Q9GZV1	360 aa		33	■■■□□ 2.87
PNKP-216	ENST00000601816	CHMP3	Q9Y3E7	222 aa		33	■■■□□ 2.87
PNKP-216	ENST00000601816	WTIP	A6NIX2	430 aa	Predicted RBP	32.99	■■■□□ 2.87
PNKP-216	ENST00000601816	FMR1	Q06787	632 aa	Known RBP eCLIP	32.99	■■■□□ 2.87
PNKP-216	ENST00000601816	IFIT5	Q13325	482 aa	Known RBP	32.99	■■■□□ 2.87
PNKP-216	ENST00000601816	LEMD3	Q9Y2U8	911 aa		32.99	■■■□□ 2.87
PNKP-216	ENST00000601816	SAMD7	Q7Z3H4	446 aa		32.98	■■■□□ 2.87
PNKP-216	ENST00000601816	PODN	Q7Z5L7	613 aa		32.98	■■■□□ 2.87
PNKP-216	ENST00000601816	ABT1	Q9ULW3	272 aa	Known RBP	32.98	■■■□□ 2.87
PNKP-216	ENST00000601816	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	32.97	■■■□□ 2.87
PNKP-216	ENST00000601816	LMBR1L	Q6UX01	489 aa		32.97	■■■□□ 2.87
PNKP-216	ENST00000601816	SSH1	Q8WYL5	1049 aa		32.97	■■■□□ 2.87
PNKP-216	ENST00000601816	GLIS2	Q9BZE0	524 aa	Predicted RBP	32.97	■■■□□ 2.87
PNKP-216	ENST00000601816	PTPRC	P08575	1304 aa		32.97	■■■□□ 2.87
PNKP-216	ENST00000601816	RSBN1L	Q6PCB5	846 aa	Predicted RBP	32.96	■■■□□ 2.87
PNKP-216	ENST00000601816	RASSF10	A6NK89	507 aa		32.95	■■■□□ 2.87
PNKP-216	ENST00000601816	HSPA1A	P0DMV8	641 aa	Known RBP	32.95	■■■□□ 2.87
PNKP-216	ENST00000601816	HSPA1B	P0DMV9	641 aa	Known RBP	32.95	■■■□□ 2.87
PNKP-216	ENST00000601816	EPHA10	Q5JZY3	1008 aa		32.95	■■■□□ 2.87
PNKP-216	ENST00000601816	ZNF804B	A4D1E1	1349 aa		32.95	■■■□□ 2.86
PNKP-216	ENST00000601816	ZNF609	O15014	1411 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	USP17L3	A6NCW0	530 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	USP17L4	A6NCW7	530 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	CHRND	Q07001	517 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	USP17L1	Q7RTZ2	530 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	AGBL3	Q8NEM8	1001 aa		32.94	■■■□□ 2.86
PNKP-216	ENST00000601816	KCNJ4	P48050	445 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	VEGFB	P49765	207 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	CCDC57	Q2TAC2	916 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	DEFB115	Q30KQ5	88 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	RBM26	Q5T8P6	1007 aa	Known RBP	32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	CDC37L1	Q7L3B6	337 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	TRMT2A	Q8IZ69	625 aa	Known RBP	32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	PSME4	Q14997	1843 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	TRPM7	Q96QT4	1865 aa		32.93	■■■□□ 2.86
PNKP-216	ENST00000601816	EGFR	P00533	1210 aa		32.92	■■■□□ 2.86
PNKP-216	ENST00000601816	ALDH1L2	Q3SY69	923 aa		32.92	■■■□□ 2.86
PNKP-216	ENST00000601816	CST9	Q5W186	159 aa		32.92	■■■□□ 2.86
PNKP-216	ENST00000601816	COA1	Q9GZY4	146 aa		32.92	■■■□□ 2.86
PNKP-216	ENST00000601816	KIF4B	Q2VIQ3	1234 aa		32.91	■■■□□ 2.86
PNKP-216	ENST00000601816	TAF7L	Q5H9L4	462 aa		32.91	■■■□□ 2.86
PNKP-216	ENST00000601816	TXNRD3	Q86VQ6	643 aa		32.9	■■■□□ 2.86
PNKP-216	ENST00000601816	CELF2	O95319	508 aa	Known RBP	32.89	■■■□□ 2.86
PNKP-216	ENST00000601816	SUCLG2	Q96I99	432 aa		32.89	■■■□□ 2.86

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms