RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 C6orf229H3BNL8 230 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 C1QTNF8P60827 252 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 GPSM2P81274 684 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 SUPT20HQ8NEM7 779 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 CDC5LQ99459 802 aaKnown RBP18.03■□□□□ 0.48
USE1-210ENST00000601662 PPP4R2Q9NY27 417 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 TIAM2Q8IVF5 1701 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 COL4A1P02462 1669 aa18.03■□□□□ 0.48
USE1-210ENST00000601662 DICER1Q9UPY3 1922 aaKnown RBP18.02■□□□□ 0.48
USE1-210ENST00000601662 FAM161AQ3B820 660 aa18.02■□□□□ 0.48
USE1-210ENST00000601662 RPAP2Q8IXW5 612 aaPredicted RBP18.02■□□□□ 0.48
USE1-210ENST00000601662 NIM1KQ8IY84 436 aa18.02■□□□□ 0.48
USE1-210ENST00000601662 C16orf71Q8IYS4 520 aaPredicted RBP18.02■□□□□ 0.48
USE1-210ENST00000601662 PLA2G12BQ9BX93 195 aa18.02■□□□□ 0.48
USE1-210ENST00000601662 ANKIB1Q9P2G1 1089 aa18.02■□□□□ 0.48
USE1-210ENST00000601662 ZNF541Q9H0D2 1346 aa18.01■□□□□ 0.47
USE1-210ENST00000601662 RIMBP2O15034 1052 aa18.01■□□□□ 0.47
USE1-210ENST00000601662 RTFDC1Q9BY42 306 aaPredicted RBP18.01■□□□□ 0.47
USE1-210ENST00000601662 VEGFAP15692 232 aaPredicted RBP18■□□□□ 0.47
USE1-210ENST00000601662 ITGA6P23229 1130 aa18■□□□□ 0.47
USE1-210ENST00000601662 EIF6P56537 245 aaKnown RBP18■□□□□ 0.47
USE1-210ENST00000601662 FOXO4P98177 505 aa18■□□□□ 0.47
USE1-210ENST00000601662 EPHA10Q5JZY3 1008 aa18■□□□□ 0.47
USE1-210ENST00000601662 GPR101Q96P66 508 aaPredicted RBP18■□□□□ 0.47
USE1-210ENST00000601662 POLLQ9UGP5 575 aa18■□□□□ 0.47
USE1-210ENST00000601662 LRRFIP2Q9Y608 721 aaKnown RBP18■□□□□ 0.47
USE1-210ENST00000601662 GJA3Q9Y6H8 435 aa18■□□□□ 0.47
USE1-210ENST00000601662 FZD9O00144 591 aa17.99■□□□□ 0.47
USE1-210ENST00000601662 CSF1RP07333 972 aa17.99■□□□□ 0.47
USE1-210ENST00000601662 IGHMBP2P38935 993 aaKnown RBP17.99■□□□□ 0.47
USE1-210ENST00000601662 LMBR1LQ6UX01 489 aa17.99■□□□□ 0.47
USE1-210ENST00000601662 SUCLG2Q96I99 432 aa17.99■□□□□ 0.47
USE1-210ENST00000601662 ANKRD18BA2A2Z9 1011 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 HMMRO75330 724 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 ATP8B2P98198 1209 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 WASHC4Q2M389 1173 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 TBC1D16Q8TBP0 767 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 MPHOSPH8Q99549 860 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 RWDD1Q9H446 243 aaPredicted RBP17.98■□□□□ 0.47
USE1-210ENST00000601662 PCDHB15Q9Y5E8 787 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 MYH3P11055 1940 aa17.98■□□□□ 0.47
USE1-210ENST00000601662 COL4A5P29400 1685 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 POTECB2RU33 542 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 TOMM70O94826 608 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 UFL1O94874 794 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 KIAA2012Q0VF49 1180 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 IFIT5Q13325 482 aaKnown RBP17.97■□□□□ 0.47
USE1-210ENST00000601662 ANKRD44Q8N8A2 993 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 CCDC136Q96JN2 1154 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 VPS33BQ9H267 617 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 C1orf115Q9H7X2 142 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 BSDC1Q9NW68 430 aaPredicted RBP17.97■□□□□ 0.47
USE1-210ENST00000601662 GGA1Q9UJY5 639 aa17.97■□□□□ 0.47
USE1-210ENST00000601662 RTL9Q8NET4 1388 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 MTX1Q13505 466 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 DOK7Q18PE1 504 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 TAF7LQ5H9L4 462 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 CEP85Q6P2H3 762 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 EYA3Q99504 573 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 ZNRF3Q9ULT6 936 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 MINPP1Q9UNW1 487 aa17.96■□□□□ 0.47
USE1-210ENST00000601662 G3V3G9 751 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 RAD17O75943 681 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 HDAC1Q13547 482 aaPredicted RBP17.95■□□□□ 0.46
USE1-210ENST00000601662 CCDC57Q2TAC2 916 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 RABL6Q3YEC7 729 aaPredicted RBP17.95■□□□□ 0.46
USE1-210ENST00000601662 DCAF8Q5TAQ9 597 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 KAZALD1Q96I82 304 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 ZNF594Q96JF6 807 aaPredicted RBP17.95■□□□□ 0.46
USE1-210ENST00000601662 ZC3H12CQ9C0D7 883 aaKnown RBP17.95■□□□□ 0.46
USE1-210ENST00000601662 BICC1Q9H694 974 aaKnown RBP17.95■□□□□ 0.46
USE1-210ENST00000601662 DBNDD1Q9H9R9 158 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 PODXL2Q9NZ53 605 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 XDHP47989 1333 aa17.95■□□□□ 0.46
USE1-210ENST00000601662 WTIPA6NIX2 430 aaPredicted RBP17.94■□□□□ 0.46
USE1-210ENST00000601662 GPC2Q8N158 579 aa17.94■□□□□ 0.46
USE1-210ENST00000601662 LRRC37AA6NMS7 1700 aa17.93■□□□□ 0.46
USE1-210ENST00000601662 ATP2B4P23634 1241 aa17.93■□□□□ 0.46
USE1-210ENST00000601662 CXCL9Q07325 125 aa17.93■□□□□ 0.46
USE1-210ENST00000601662 DUOX1Q9NRD9 1551 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 IQCA1LA6NCM1 817 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 SRGAP3O43295 1099 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 CIAPIN1Q6FI81 312 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 HELBQ8NG08 1087 aaPredicted RBP17.92■□□□□ 0.46
USE1-210ENST00000601662 RBM46Q8TBY0 533 aaKnown RBP17.92■□□□□ 0.46
USE1-210ENST00000601662 SSH3Q8TE77 659 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 L3MBTL3Q96JM7 780 aaPredicted RBP17.92■□□□□ 0.46
USE1-210ENST00000601662 HACL1Q9UJ83 578 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 SPEF2Q9C093 1822 aa17.92■□□□□ 0.46
USE1-210ENST00000601662 YDJCA8MPS7 323 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 ECE2O60344 883 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 CHRNDQ07001 517 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 EAPPQ56P03 285 aaPredicted RBP17.91■□□□□ 0.46
USE1-210ENST00000601662 LDHAL6AQ6ZMR3 332 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 SIRT2Q8IXJ6 389 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 CNNM1Q9NRU3 951 aa17.91■□□□□ 0.46
USE1-210ENST00000601662 WDR90Q96KV7 1748 aa17.9■□□□□ 0.46
USE1-210ENST00000601662 TAF5LO75529 589 aa17.9■□□□□ 0.46
USE1-210ENST00000601662 LMOD1P29536 600 aaPredicted RBP17.9■□□□□ 0.46
USE1-210ENST00000601662 KCNJ4P48050 445 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms