RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TTC28Q96AY4 2481 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 POLR2AP24928 1970 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 LRRC37AA6NMS7 1700 aa11.32□□□□□ -0.6
SHKBP1-220ENST00000599716 PSMD14O00487 310 aa11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 GPSM2P81274 684 aa11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 PKN2Q16513 984 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 SUPT20HQ8NEM7 779 aa11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 PNNQ9H307 717 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 NSFL1CQ9UNZ2 370 aaKnown RBP11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 TRIM35Q9UPQ4 493 aa11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 ASTN2O75129 1339 aaPredicted RBP11.31□□□□□ -0.6
SHKBP1-220ENST00000599716 ADM5C9JUS6 153 aa11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 HSP90AB3PQ58FF7 597 aa11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 HDGFL1Q5TGJ6 251 aa11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 CCDC85AQ96PX6 553 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 POLLQ9UGP5 575 aa11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 SCN9AQ15858 1988 aa11.3□□□□□ -0.6
SHKBP1-220ENST00000599716 C6orf229H3BNL8 230 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 CHL1O00533 1208 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 TNIP1Q15025 636 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 WASHC4Q2M389 1173 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 ISCA1Q9BUE6 129 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 SEC31BQ9NQW1 1179 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 PGAP2Q9UHJ9 254 aa11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 SCAF8Q9UPN6 1271 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 COLQQ9Y215 455 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-220ENST00000599716 RTL9Q8NET4 1388 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 H7C1D1 291 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 ELL2O00472 640 aaPredicted RBP11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 ECE2O60344 883 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 HUNKP57058 714 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 ANKRD13DQ6ZTN6 518 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 CDC37L1Q7L3B6 337 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 PLBD2Q8NHP8 589 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 VPS33BQ9H267 617 aa11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 PHAXQ9H814 394 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-220ENST00000599716 WTIPA6NIX2 430 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 IRS4O14654 1257 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 LMOD3Q0VAK6 560 aa11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 KRT26Q7Z3Y9 468 aa11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 ADAMTS8Q9UP79 889 aa11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 KIAA0100Q14667 2235 aaKnown RBP11.27□□□□□ -0.61
SHKBP1-220ENST00000599716 DUSP27Q5VZP5 1158 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 TBC1D16Q8TBP0 767 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 ZC3H15Q8WU90 426 aaKnown RBP11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 MBIPQ9NS73 344 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 BABAM1Q9NWV8 329 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 CDHR2Q9BYE9 1310 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 MUC3AQ02505 3323 aa11.26□□□□□ -0.61
SHKBP1-220ENST00000599716 FAM155AB1AL88 458 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 TRPA1O75762 1119 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 RALBP1Q15311 655 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 SF3B3Q15393 1217 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 RUNDC1Q96C34 613 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 MYD88Q99836 296 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 RNF186Q9NXI6 227 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 GGA3Q9NZ52 723 aa11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 DBF4Q9UBU7 674 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 MYBBP1AQ9BQG0 1328 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-220ENST00000599716 UFL1O94874 794 aa11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 RPS8P62241 208 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 KIF23Q02241 960 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 WDR43Q15061 677 aaKnown RBP eCLIP11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 KIF4BQ2VIQ3 1234 aa11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 DPF2Q92785 391 aa11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 GBA2Q9HCG7 927 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-220ENST00000599716 SPEF2Q9C093 1822 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 ZNF157P51786 506 aaPredicted RBP11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 PRAMEF18Q5VWM3 479 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 RGMBQ6NW40 437 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 MOB2Q70IA6 237 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 TMC4Q7Z404 712 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 RIC3Q7Z5B4 369 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 MXD3Q9BW11 206 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 ANKIB1Q9P2G1 1089 aa11.23□□□□□ -0.61
SHKBP1-220ENST00000599716 APAF1O14727 1248 aa11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 ANGEL2Q5VTE6 544 aaKnown RBP11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 DCPSQ96C86 337 aaKnown RBP11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 CDCA5Q96FF9 252 aa11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 ZC3H12CQ9C0D7 883 aaKnown RBP11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 HYPKQ9NX55 129 aa11.22□□□□□ -0.61
SHKBP1-220ENST00000599716 G3V3G9 751 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 VIL1P09327 827 aaKnown RBP11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 GOLGA2Q08379 1002 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 DCAF8Q5TAQ9 597 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 FBXO46Q6PJ61 603 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 C2orf69Q8N8R5 385 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 ZBTB38Q8NAP3 1195 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 C8orf58Q8NAV2 365 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 EYA3Q99504 573 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 GGA1Q9UJY5 639 aa11.21□□□□□ -0.61
SHKBP1-220ENST00000599716 ZNF853P0CG23 659 aa11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 RPS12P25398 132 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 SCARF1Q14162 830 aa11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 SULF1Q8IWU6 871 aa11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 TSPYL6Q8N831 410 aa11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 HDAC9Q9UKV0 1011 aa11.2□□□□□ -0.62
SHKBP1-220ENST00000599716 SLC10A3P09131 477 aa11.19□□□□□ -0.62
SHKBP1-220ENST00000599716 HOXB7P09629 217 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms