RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 CIAO1O76071 339 aa20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 RFX5P48382 616 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 CNNM1Q9NRU3 951 aa20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 NSFL1CQ9UNZ2 370 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 LRRC37AA6NMS7 1700 aa20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 LMNB1P20700 586 aa20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 PTPN12Q05209 780 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 SSH3Q8TE77 659 aa20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 ANKIB1Q9P2G1 1089 aa20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 LEMD3Q9Y2U8 911 aa20.61■□□□□ 0.89
SHKBP1-219ENST00000599575 ZC3H4Q9UPT8 1303 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-219ENST00000599575 HMMRO75330 724 aa20.6■□□□□ 0.89
SHKBP1-219ENST00000599575 ATP2B4P23634 1241 aa20.6■□□□□ 0.89
SHKBP1-219ENST00000599575 POLA2Q14181 598 aa20.6■□□□□ 0.89
SHKBP1-219ENST00000599575 EYA3Q99504 573 aa20.6■□□□□ 0.89
SHKBP1-219ENST00000599575 EYA2O00167 538 aa20.59■□□□□ 0.89
SHKBP1-219ENST00000599575 CEP85Q6P2H3 762 aa20.59■□□□□ 0.89
SHKBP1-219ENST00000599575 GGA1Q9UJY5 639 aa20.59■□□□□ 0.89
SHKBP1-219ENST00000599575 RIPOR2Q9Y4F9 1068 aa20.59■□□□□ 0.89
SHKBP1-219ENST00000599575 IL15P40933 162 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-219ENST00000599575 GPSM2P81274 684 aa20.58■□□□□ 0.89
SHKBP1-219ENST00000599575 CHRNDQ07001 517 aa20.58■□□□□ 0.89
SHKBP1-219ENST00000599575 OLFM4Q6UX06 510 aa20.58■□□□□ 0.89
SHKBP1-219ENST00000599575 ZNF594Q96JF6 807 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-219ENST00000599575 TBC1D16Q8TBP0 767 aa20.57■□□□□ 0.88
SHKBP1-219ENST00000599575 FER1L6Q2WGJ9 1857 aa20.56■□□□□ 0.88
SHKBP1-219ENST00000599575 PNMA6EA0A0J9YXQ4 647 aa20.56■□□□□ 0.88
SHKBP1-219ENST00000599575 IARSP41252 1262 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-219ENST00000599575 KIAA2012Q0VF49 1180 aa20.56■□□□□ 0.88
SHKBP1-219ENST00000599575 C1orf115Q9H7X2 142 aa20.56■□□□□ 0.88
SHKBP1-219ENST00000599575 COL4A1P02462 1669 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 C6orf229H3BNL8 230 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 UBE4AQ14139 1066 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 WASHC4Q2M389 1173 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 HSP90AB4PQ58FF6 505 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 CRBNQ96SW2 442 aa20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 ZC3H12CQ9C0D7 883 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 NOP58Q9Y2X3 529 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-219ENST00000599575 CACNA1SQ13698 1873 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 UFL1O94874 794 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 PDE8BO95263 885 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 RASSF7Q02833 373 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 METTL24Q5JXM2 366 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 C15orf52Q6ZUT6 534 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 KLHDC4Q8TBB5 520 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 JDP2Q8WYK2 163 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 POLLQ9UGP5 575 aa20.54■□□□□ 0.88
SHKBP1-219ENST00000599575 ZNF804BA4D1E1 1349 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 KCNJ4P48050 445 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 G3BP1Q13283 466 aaKnown RBP eCLIP20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 LRRC24Q50LG9 513 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 C9orf131Q5VYM1 1079 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 ATG9AQ7Z3C6 839 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 PUS3Q9BZE2 481 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 ZNF277Q9NRM2 450 aaPredicted RBP20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 RNF181Q9P0P0 153 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 CEP126Q9P2H0 1117 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 MED23Q9ULK4 1368 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 TAF1P21675 1872 aa20.53■□□□□ 0.88
SHKBP1-219ENST00000599575 PPIP5K2O43314 1243 aa20.52■□□□□ 0.88
SHKBP1-219ENST00000599575 LARGE2Q8N3Y3 721 aa20.52■□□□□ 0.88
SHKBP1-219ENST00000599575 VGLL2Q8N8G2 317 aa20.52■□□□□ 0.88
SHKBP1-219ENST00000599575 LTBP1Q14766 1721 aa20.52■□□□□ 0.88
SHKBP1-219ENST00000599575 DUOX1Q9NRD9 1551 aa20.51■□□□□ 0.87
SHKBP1-219ENST00000599575 PUM3Q15397 648 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-219ENST00000599575 ERC1Q8IUD2 1116 aa20.51■□□□□ 0.87
SHKBP1-219ENST00000599575 SIL1Q9H173 461 aa20.51■□□□□ 0.87
SHKBP1-219ENST00000599575 SURF6O75683 361 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-219ENST00000599575 PA2G4Q9UQ80 394 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-219ENST00000599575 AKAP2Q9Y2D5 859 aa20.5■□□□□ 0.87
SHKBP1-219ENST00000599575 PRELPP51888 382 aa20.49■□□□□ 0.87
SHKBP1-219ENST00000599575 SLC51AQ86UW1 340 aa20.49■□□□□ 0.87
SHKBP1-219ENST00000599575 SIRT2Q8IXJ6 389 aa20.49■□□□□ 0.87
SHKBP1-219ENST00000599575 NIM1KQ8IY84 436 aa20.49■□□□□ 0.87
SHKBP1-219ENST00000599575 LPIN2Q92539 896 aa20.49■□□□□ 0.87
SHKBP1-219ENST00000599575 FZD9O00144 591 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 TAF5LO75529 589 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 IFIT1P09914 478 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 AOC3Q16853 763 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 PODNQ7Z5L7 613 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 HELBQ8NG08 1087 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 COA1Q9GZY4 146 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 GPR108Q9NPR9 543 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 ZNRF3Q9ULT6 936 aa20.48■□□□□ 0.87
SHKBP1-219ENST00000599575 G3V3G9 751 aa20.47■□□□□ 0.87
SHKBP1-219ENST00000599575 RAB11FIP3O75154 756 aa20.47■□□□□ 0.87
SHKBP1-219ENST00000599575 FGFR2P21802 821 aa20.47■□□□□ 0.87
SHKBP1-219ENST00000599575 OS9Q13438 667 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-219ENST00000599575 DCAF8Q5TAQ9 597 aa20.47■□□□□ 0.87
SHKBP1-219ENST00000599575 DPY19L2Q6NUT2 758 aa20.46■□□□□ 0.87
SHKBP1-219ENST00000599575 ZNF804AQ7Z570 1209 aa20.46■□□□□ 0.87
SHKBP1-219ENST00000599575 EXOC6Q8TAG9 804 aa20.46■□□□□ 0.87
SHKBP1-219ENST00000599575 ZBTB22O15209 634 aa20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 SLC5A1P13866 664 aa20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 EIF6P56537 245 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 HDAC1Q13547 482 aaPredicted RBP20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 CAVIN4Q5BKX8 364 aa20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 PCDHB15Q9Y5E8 787 aa20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 IRS2Q9Y4H2 1338 aa20.45■□□□□ 0.86
SHKBP1-219ENST00000599575 SPEF2Q9C093 1822 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms