RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 RTL9Q8NET4 1388 aa20.53■□□□□ 0.88
USHBP1-206ENST00000596436 ZNF609O15014 1411 aa20.53■□□□□ 0.88
USHBP1-206ENST00000596436 SCN9AQ15858 1988 aa20.52■□□□□ 0.88
USHBP1-206ENST00000596436 ELL2O00472 640 aaPredicted RBP20.52■□□□□ 0.88
USHBP1-206ENST00000596436 RPS12P25398 132 aaKnown RBP20.52■□□□□ 0.88
USHBP1-206ENST00000596436 TSPYL6Q8N831 410 aa20.52■□□□□ 0.88
USHBP1-206ENST00000596436 ZNF428Q96B54 188 aa20.52■□□□□ 0.88
USHBP1-206ENST00000596436 DBNDD1Q9H9R9 158 aa20.52■□□□□ 0.88
USHBP1-206ENST00000596436 PODXL2Q9NZ53 605 aa20.52■□□□□ 0.88
USHBP1-206ENST00000596436 PSME4Q14997 1843 aa20.51■□□□□ 0.87
USHBP1-206ENST00000596436 IRS4O14654 1257 aaPredicted RBP20.51■□□□□ 0.87
USHBP1-206ENST00000596436 EGFRP00533 1210 aa20.51■□□□□ 0.87
USHBP1-206ENST00000596436 TBC1D16Q8TBP0 767 aa20.51■□□□□ 0.87
USHBP1-206ENST00000596436 RPS8P62241 208 aaKnown RBP20.5■□□□□ 0.87
USHBP1-206ENST00000596436 SAMD7Q7Z3H4 446 aa20.5■□□□□ 0.87
USHBP1-206ENST00000596436 USP48Q86UV5 1035 aa20.5■□□□□ 0.87
USHBP1-206ENST00000596436 ZBTB38Q8NAP3 1195 aaPredicted RBP20.5■□□□□ 0.87
USHBP1-206ENST00000596436 EYA3Q99504 573 aa20.5■□□□□ 0.87
USHBP1-206ENST00000596436 POLR2AP24928 1970 aaKnown RBP20.49■□□□□ 0.87
USHBP1-206ENST00000596436 C6orf229H3BNL8 230 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 ECE2O60344 883 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 RGS19P49795 217 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 NOGQ13253 232 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 ZNF408Q9H9D4 720 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 KCNQ5Q9NR82 932 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 TSKSQ9UJT2 592 aa20.49■□□□□ 0.87
USHBP1-206ENST00000596436 RIMBP2O15034 1052 aa20.48■□□□□ 0.87
USHBP1-206ENST00000596436 TBC1D10BQ4KMP7 808 aaPredicted RBP20.48■□□□□ 0.87
USHBP1-206ENST00000596436 DLK2Q6UY11 383 aa20.48■□□□□ 0.87
USHBP1-206ENST00000596436 VIL1P09327 827 aaKnown RBP20.47■□□□□ 0.87
USHBP1-206ENST00000596436 HUNKP57058 714 aa20.47■□□□□ 0.87
USHBP1-206ENST00000596436 RTL5Q5HYW3 569 aaPredicted RBP20.47■□□□□ 0.87
USHBP1-206ENST00000596436 ZIC5Q96T25 663 aa20.47■□□□□ 0.87
USHBP1-206ENST00000596436 FAM155AB1AL88 458 aaPredicted RBP20.46■□□□□ 0.87
USHBP1-206ENST00000596436 DOK7Q18PE1 504 aa20.46■□□□□ 0.87
USHBP1-206ENST00000596436 KRT26Q7Z3Y9 468 aa20.46■□□□□ 0.87
USHBP1-206ENST00000596436 CCDC191Q8NCU4 936 aa20.46■□□□□ 0.87
USHBP1-206ENST00000596436 PHAXQ9H814 394 aaKnown RBP20.46■□□□□ 0.87
USHBP1-206ENST00000596436 SEC31BQ9NQW1 1179 aa20.46■□□□□ 0.87
USHBP1-206ENST00000596436 CASP8AP2Q9UKL3 1982 aa20.45■□□□□ 0.86
USHBP1-206ENST00000596436 PCCAP05165 728 aaPredicted RBP20.45■□□□□ 0.86
USHBP1-206ENST00000596436 HSP90B1P14625 803 aaKnown RBP20.45■□□□□ 0.86
USHBP1-206ENST00000596436 GOLGA2Q08379 1002 aa20.45■□□□□ 0.86
USHBP1-206ENST00000596436 TWISTNBQ3B726 338 aaPredicted RBP20.45■□□□□ 0.86
USHBP1-206ENST00000596436 RIC3Q7Z5B4 369 aa20.45■□□□□ 0.86
USHBP1-206ENST00000596436 TNRC18O15417 2968 aaPredicted RBP20.44■□□□□ 0.86
USHBP1-206ENST00000596436 EXOSC9Q06265 439 aaKnown RBP20.44■□□□□ 0.86
USHBP1-206ENST00000596436 RGMBQ6NW40 437 aa20.44■□□□□ 0.86
USHBP1-206ENST00000596436 ZC3H12CQ9C0D7 883 aaKnown RBP20.44■□□□□ 0.86
USHBP1-206ENST00000596436 MYH16Q9H6N6 1097 aa20.44■□□□□ 0.86
USHBP1-206ENST00000596436 GBA2Q9HCG7 927 aaPredicted RBP20.44■□□□□ 0.86
USHBP1-206ENST00000596436 ADM5C9JUS6 153 aa20.43■□□□□ 0.86
USHBP1-206ENST00000596436 ZNF280AP59817 542 aaPredicted RBP20.43■□□□□ 0.86
USHBP1-206ENST00000596436 KIF4BQ2VIQ3 1234 aa20.43■□□□□ 0.86
USHBP1-206ENST00000596436 FAM161AQ3B820 660 aa20.43■□□□□ 0.86
USHBP1-206ENST00000596436 DCPSQ96C86 337 aaKnown RBP20.43■□□□□ 0.86
USHBP1-206ENST00000596436 MCOLN1Q9GZU1 580 aa20.43■□□□□ 0.86
USHBP1-206ENST00000596436 ZNF646O15015 1829 aaPredicted RBP20.43■□□□□ 0.86
USHBP1-206ENST00000596436 PDE8AO60658 829 aa20.42■□□□□ 0.86
USHBP1-206ENST00000596436 UFL1O94874 794 aa20.42■□□□□ 0.86
USHBP1-206ENST00000596436 CCDC152Q4G0S7 254 aa20.42■□□□□ 0.86
USHBP1-206ENST00000596436 MYD88Q99836 296 aa20.42■□□□□ 0.86
USHBP1-206ENST00000596436 CCDC85CA6NKD9 419 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 C2orf69Q8N8R5 385 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 AGBL3Q8NEM8 1001 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 CCDC102AQ96A19 550 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 CDCA7LQ96GN5 454 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 GMLQ99445 158 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 METTL22Q9BUU2 404 aaPredicted RBP20.41■□□□□ 0.86
USHBP1-206ENST00000596436 CWC25Q9NXE8 425 aaPredicted RBP20.41■□□□□ 0.86
USHBP1-206ENST00000596436 SAGE1Q9NXZ1 904 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 GGA1Q9UJY5 639 aa20.41■□□□□ 0.86
USHBP1-206ENST00000596436 VAMP4O75379 141 aa20.4■□□□□ 0.86
USHBP1-206ENST00000596436 CCDC30Q5VVM6 783 aa20.4■□□□□ 0.86
USHBP1-206ENST00000596436 RSBN1LQ6PCB5 846 aaPredicted RBP20.4■□□□□ 0.86
USHBP1-206ENST00000596436 GGA3Q9NZ52 723 aa20.4■□□□□ 0.86
USHBP1-206ENST00000596436 ASTN2O75129 1339 aaPredicted RBP20.39■□□□□ 0.85
USHBP1-206ENST00000596436 XDHP47989 1333 aa20.39■□□□□ 0.85
USHBP1-206ENST00000596436 SLFN5Q08AF3 891 aa20.39■□□□□ 0.85
USHBP1-206ENST00000596436 RBM26Q5T8P6 1007 aaKnown RBP20.39■□□□□ 0.85
USHBP1-206ENST00000596436 ANKIB1Q9P2G1 1089 aa20.39■□□□□ 0.85
USHBP1-206ENST00000596436 MYH3P11055 1940 aa20.39■□□□□ 0.85
USHBP1-206ENST00000596436 CACNA1FO60840 1977 aa20.38■□□□□ 0.85
USHBP1-206ENST00000596436 E9PSI1 815 aa20.38■□□□□ 0.85
USHBP1-206ENST00000596436 SLC10A3P09131 477 aa20.38■□□□□ 0.85
USHBP1-206ENST00000596436 MLLT1Q03111 559 aaPredicted RBP20.38■□□□□ 0.85
USHBP1-206ENST00000596436 SULF1Q8IWU6 871 aa20.38■□□□□ 0.85
USHBP1-206ENST00000596436 CDCA5Q96FF9 252 aa20.38■□□□□ 0.85
USHBP1-206ENST00000596436 PAPPA2Q9BXP8 1791 aa20.37■□□□□ 0.85
USHBP1-206ENST00000596436 PITPNM2Q9BZ72 1349 aa20.37■□□□□ 0.85
USHBP1-206ENST00000596436 KIF23Q02241 960 aaPredicted RBP20.37■□□□□ 0.85
USHBP1-206ENST00000596436 CHMP4AQ9BY43 222 aa20.37■□□□□ 0.85
USHBP1-206ENST00000596436 AKAP11Q9UKA4 1901 aa20.36■□□□□ 0.85
USHBP1-206ENST00000596436 DDX58O95786 925 aaKnown RBP20.36■□□□□ 0.85
USHBP1-206ENST00000596436 IGKV5-2P06315 115 aa20.36■□□□□ 0.85
USHBP1-206ENST00000596436 ZNF157P51786 506 aaPredicted RBP20.36■□□□□ 0.85
USHBP1-206ENST00000596436 DGKZQ13574 1117 aa20.36■□□□□ 0.85
USHBP1-206ENST00000596436 PODNQ7Z5L7 613 aa20.36■□□□□ 0.85
USHBP1-206ENST00000596436 ANKRD18AQ8IVF6 992 aa20.36■□□□□ 0.85
USHBP1-206ENST00000596436 JARID2Q92833 1246 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms