RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 TSC1Q92574 1164 aa18.34■□□□□ 0.53
PNKP-204ENST00000594661 LMBRD1Q9NUN5 540 aa18.34■□□□□ 0.53
PNKP-204ENST00000594661 LRRC24Q50LG9 513 aa18.33■□□□□ 0.52
PNKP-204ENST00000594661 PTF1AQ7RTS3 328 aa18.33■□□□□ 0.52
PNKP-204ENST00000594661 PDCL2Q8N4E4 241 aa18.33■□□□□ 0.52
PNKP-204ENST00000594661 SMARCC1Q92922 1105 aaPredicted RBP18.33■□□□□ 0.52
PNKP-204ENST00000594661 PLA2G12BQ9BX93 195 aa18.33■□□□□ 0.52
PNKP-204ENST00000594661 UBN2Q6ZU65 1347 aa18.33■□□□□ 0.52
PNKP-204ENST00000594661 ZBTB22O15209 634 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 SGSM2O43147 1006 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 GABPB1Q06547 395 aaPredicted RBP18.32■□□□□ 0.52
PNKP-204ENST00000594661 CCDC85AQ96PX6 553 aaPredicted RBP18.32■□□□□ 0.52
PNKP-204ENST00000594661 FEZ1Q99689 392 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 BOLA2Q9H3K6 86 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 BCL2L12Q9HB09 334 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 COL5A3P25940 1745 aaPredicted RBP18.32■□□□□ 0.52
PNKP-204ENST00000594661 CDHR2Q9BYE9 1310 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 MEX3CQ5U5Q3 659 aaKnown RBP18.32■□□□□ 0.52
PNKP-204ENST00000594661 LRSAM1Q6UWE0 723 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 PIBF1Q8WXW3 757 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 EVI5LQ96CN4 794 aa18.32■□□□□ 0.52
PNKP-204ENST00000594661 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.32■□□□□ 0.52
PNKP-204ENST00000594661 EYA2O00167 538 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 CWC27Q6UX04 472 aaKnown RBP18.31■□□□□ 0.52
PNKP-204ENST00000594661 ANKRD7Q92527 254 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 DBNDD2Q9BQY9 259 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 PUS3Q9BZE2 481 aaKnown RBP18.31■□□□□ 0.52
PNKP-204ENST00000594661 CSF1RP07333 972 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 IL15P40933 162 aaPredicted RBP18.31■□□□□ 0.52
PNKP-204ENST00000594661 ZNF34Q8IZ26 560 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 PALD1Q9ULE6 856 aa18.31■□□□□ 0.52
PNKP-204ENST00000594661 NEK4P51957 841 aa18.3■□□□□ 0.52
PNKP-204ENST00000594661 CCDC57Q2TAC2 916 aa18.3■□□□□ 0.52
PNKP-204ENST00000594661 FAM182BQ5T319 152 aa18.3■□□□□ 0.52
PNKP-204ENST00000594661 ZNF771Q7L3S4 317 aaPredicted RBP18.3■□□□□ 0.52
PNKP-204ENST00000594661 TRMT112Q9UI30 125 aaKnown RBP18.3■□□□□ 0.52
PNKP-204ENST00000594661 SPDYE4A6NLX3 237 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 ANAPC15P60006 121 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 DNAJC2Q99543 621 aaKnown RBP18.29■□□□□ 0.52
PNKP-204ENST00000594661 DIAPH3Q9NSV4 1193 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 AFF2P51816 1311 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 CIAO1O76071 339 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 KCNQ4P56696 695 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 ZNF831Q5JPB2 1677 aa18.29■□□□□ 0.52
PNKP-204ENST00000594661 CAMTA2O94983 1202 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 CYP2E1P05181 493 aaPredicted RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 CHRM1P11229 460 aaPredicted RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 ATP5JP18859 108 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 LINC00116Q8NCU8 138 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 ZNF609O15014 1411 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 IRS4O14654 1257 aaPredicted RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 MCTP1Q6DN14 999 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 EDC3Q96F86 508 aaKnown RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 GJD4Q96KN9 370 aaPredicted RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 LSG1Q9H089 658 aaKnown RBP18.28■□□□□ 0.52
PNKP-204ENST00000594661 SPTLC3Q9NUV7 552 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 OGFRQ9NZT2 677 aa18.28■□□□□ 0.52
PNKP-204ENST00000594661 RAD50Q92878 1312 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 MYH3P11055 1940 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 BTAF1O14981 1849 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 EPB41L2O43491 1005 aaKnown RBP18.27■□□□□ 0.52
PNKP-204ENST00000594661 CTSWP56202 376 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 NOLC1Q14978 699 aaKnown RBP eCLIP18.27■□□□□ 0.52
PNKP-204ENST00000594661 TEX2Q8IWB9 1127 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 TTLL11Q8NHH1 800 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 GPR108Q9NPR9 543 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 NDUFB9Q9Y6M9 179 aa18.27■□□□□ 0.52
PNKP-204ENST00000594661 NHSQ6T4R5 1651 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 TIMM10P62072 90 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 NUCB2P80303 420 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 IFIT5Q13325 482 aaKnown RBP18.26■□□□□ 0.51
PNKP-204ENST00000594661 GREM2Q9H772 168 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 NEUROD6Q96NK8 337 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 FSD1Q9BTV5 496 aa18.26■□□□□ 0.51
PNKP-204ENST00000594661 U2AF2P26368 475 aaKnown RBP eCLIP18.25■□□□□ 0.514e-8■□□□□ 9.6
PNKP-204ENST00000594661 HSPA4P34932 840 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 SUSD4Q5VX71 490 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 RUFY2Q8WXA3 655 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 FAM227BQ96M60 508 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 CWC22Q9HCG8 908 aaKnown RBP18.25■□□□□ 0.51
PNKP-204ENST00000594661 ITGA6P23229 1130 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 MCM2P49736 904 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 NMIQ13287 307 aaPredicted RBP18.25■□□□□ 0.51
PNKP-204ENST00000594661 ZGPATQ8N5A5 531 aaKnown RBP18.25■□□□□ 0.51
PNKP-204ENST00000594661 GPT2Q8TD30 523 aa18.25■□□□□ 0.51
PNKP-204ENST00000594661 ATRNO75882 1429 aa18.24■□□□□ 0.51
PNKP-204ENST00000594661 CCDC66A2RUB6 948 aa18.24■□□□□ 0.51
PNKP-204ENST00000594661 PDE8AO60658 829 aa18.24■□□□□ 0.51
PNKP-204ENST00000594661 PTMAP06454 111 aaKnown RBP18.24■□□□□ 0.51
PNKP-204ENST00000594661 IL17RAQ96F46 866 aa18.24■□□□□ 0.51
PNKP-204ENST00000594661 BCORQ6W2J9 1755 aa18.24■□□□□ 0.51
PNKP-204ENST00000594661 A0A1B0GUL7 405 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 FAM177BA6PVY3 158 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 IGSF3O75054 1194 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 KCNJ4P48050 445 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 TMX3Q96JJ7 454 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 HAUS7Q99871 368 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 CEP126Q9P2H0 1117 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 FBXO3Q9UK99 471 aa18.23■□□□□ 0.51
PNKP-204ENST00000594661 RIC1Q4ADV7 1423 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms