RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.89□□□□□ -0.19
VRK3-208ENST00000594104 TMEM63CQ9P1W3 806 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 ATP5J2-PTCD1G3V325 749 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 PTCD1O75127 700 aaKnown RBP13.89□□□□□ -0.19
VRK3-208ENST00000594104 F13A1P00488 732 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 RPS6KB1P23443 525 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 ADCK5Q3MIX3 580 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 PAPPAQ13219 1627 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 UBE2HP62256 183 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 MCMDC2Q4G0Z9 681 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 USP48Q86UV5 1035 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 XIRP1Q702N8 1843 aaKnown RBP13.88□□□□□ -0.19
VRK3-208ENST00000594104 PRIM1P49642 420 aaKnown RBP13.88□□□□□ -0.19
VRK3-208ENST00000594104 EVA1CP58658 441 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 LRRFIP1Q32MZ4 808 aaKnown RBP13.88□□□□□ -0.19
VRK3-208ENST00000594104 KBTBD3Q8NAB2 608 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 CHMP4CQ96CF2 233 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 ISCA1Q9BUE6 129 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 HELLSQ9NRZ9 838 aa13.88□□□□□ -0.19
VRK3-208ENST00000594104 PALLDQ8WX93 1383 aa13.87□□□□□ -0.19
VRK3-208ENST00000594104 SH3TC1Q8TE82 1336 aa13.87□□□□□ -0.19
VRK3-208ENST00000594104 GJB2P29033 226 aa13.87□□□□□ -0.19
VRK3-208ENST00000594104 FAM184AQ8NB25 1140 aa13.87□□□□□ -0.19
VRK3-208ENST00000594104 RBSNQ9H1K0 784 aa13.87□□□□□ -0.19
VRK3-208ENST00000594104 EYA2O00167 538 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 HSPA2P54652 639 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 IRF5Q13568 498 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 UVSSAQ2YD98 709 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 ATG9AQ7Z3C6 839 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 CCDC83Q8IWF9 413 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 PDLIM2Q96JY6 352 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 PLA2G12BQ9BX93 195 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 AFDNP55196 1824 aaKnown RBP13.86□□□□□ -0.19
VRK3-208ENST00000594104 TCIRG1Q13488 830 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 ME3Q16798 604 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 TTLL7Q6ZT98 887 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 DBNDD2Q9BQY9 259 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 TSPY26PQ9H489 355 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 RBM27Q9P2N5 1060 aaKnown RBP13.86□□□□□ -0.19
VRK3-208ENST00000594104 TPCN1Q9ULQ1 816 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 MTMR6Q9Y217 621 aa13.86□□□□□ -0.19
VRK3-208ENST00000594104 A1BGP04217 495 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 PYGBP11216 843 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 CCDC183Q5T5S1 534 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 TMOD3Q9NYL9 352 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 AKAP2Q9Y2D5 859 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 PIP4K2AP48426 406 aaPredicted RBP13.85□□□□□ -0.19
VRK3-208ENST00000594104 CCDC97Q96F63 343 aaPredicted RBP13.85□□□□□ -0.19
VRK3-208ENST00000594104 DSCC1Q9BVC3 393 aa13.85□□□□□ -0.19
VRK3-208ENST00000594104 NUP188Q5SRE5 1749 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 SYCE3A1L190 88 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 LARGE1O95461 756 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 STARD3NLO95772 234 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 CPA1P15085 419 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 NEK1Q96PY6 1258 aa13.84□□□□□ -0.19
VRK3-208ENST00000594104 PCCAP05165 728 aaPredicted RBP13.83□□□□□ -0.19
VRK3-208ENST00000594104 MCM5P33992 734 aa13.83□□□□□ -0.19
VRK3-208ENST00000594104 ZNF589Q86UQ0 364 aaPredicted RBP13.83□□□□□ -0.19
VRK3-208ENST00000594104 ZSCAN30Q86W11 494 aa13.83□□□□□ -0.19
VRK3-208ENST00000594104 DDX54Q8TDD1 881 aaKnown RBP13.83□□□□□ -0.19
VRK3-208ENST00000594104 JARID2Q92833 1246 aaPredicted RBP13.83□□□□□ -0.19
VRK3-208ENST00000594104 PAG1Q9NWQ8 432 aa13.83□□□□□ -0.19
VRK3-208ENST00000594104 SERPINA10Q9UK55 444 aa13.83□□□□□ -0.19
VRK3-208ENST00000594104 NSFL1CQ9UNZ2 370 aaKnown RBP13.83□□□□□ -0.19
VRK3-208ENST00000594104 ABCC12Q96J65 1359 aa13.83□□□□□ -0.19
VRK3-208ENST00000594104 LARP1BQ659C4 914 aaKnown RBP13.83□□□□□ -0.2
VRK3-208ENST00000594104 FBXW7Q969H0 707 aa13.83□□□□□ -0.2
VRK3-208ENST00000594104 CEP126Q9P2H0 1117 aa13.83□□□□□ -0.2
VRK3-208ENST00000594104 ELP1O95163 1332 aa13.83□□□□□ -0.2
VRK3-208ENST00000594104 HSP90AB3PQ58FF7 597 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 ZMYM1Q5SVZ6 1142 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 KIF6Q6ZMV9 814 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 LLPHQ9BRT6 129 aaKnown RBP13.82□□□□□ -0.2
VRK3-208ENST00000594104 CHMP3Q9Y3E7 222 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 SPEF2Q9C093 1822 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 ZNF609O15014 1411 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 GADD45BO75293 160 aaPredicted RBP13.82□□□□□ -0.2
VRK3-208ENST00000594104 ST3GAL1Q11201 340 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 TOB2Q14106 344 aaPredicted RBP13.82□□□□□ -0.2
VRK3-208ENST00000594104 CHAMP1Q96JM3 812 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 DNAJC2Q99543 621 aaKnown RBP13.82□□□□□ -0.2
VRK3-208ENST00000594104 CNPY2Q9Y2B0 182 aa13.82□□□□□ -0.2
VRK3-208ENST00000594104 ABCA3Q99758 1704 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 CSF1RP07333 972 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
VRK3-208ENST00000594104 MLLT3P42568 568 aaPredicted RBP13.81□□□□□ -0.2
VRK3-208ENST00000594104 CCDC57Q2TAC2 916 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 CDHR2Q9BYE9 1310 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 RNF113AO15541 343 aaKnown RBP13.81□□□□□ -0.2
VRK3-208ENST00000594104 KRT85P78386 507 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 ZBTB38Q8NAP3 1195 aaPredicted RBP13.81□□□□□ -0.2
VRK3-208ENST00000594104 NEUROD6Q96NK8 337 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 LARP6Q9BRS8 491 aaKnown RBP13.81□□□□□ -0.2
VRK3-208ENST00000594104 MFRPQ9BY79 579 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 ZBTB3Q9H5J0 574 aa13.81□□□□□ -0.2
VRK3-208ENST00000594104 STRCQ7RTU9 1775 aa13.8□□□□□ -0.2
VRK3-208ENST00000594104 PPP1R37O75864 691 aa13.8□□□□□ -0.2
VRK3-208ENST00000594104 FBXL16Q8N461 479 aa13.8□□□□□ -0.2
VRK3-208ENST00000594104 NECAB1Q8N987 351 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms