RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CRKLP46109 303 aaKnown RBP23.55■■□□□ 1.36
CLIP3-206ENST00000593074 IFIT5Q13325 482 aaKnown RBP23.55■■□□□ 1.36
CLIP3-206ENST00000593074 CHAMP1Q96JM3 812 aa23.55■■□□□ 1.36
CLIP3-206ENST00000593074 TRMT112Q9UI30 125 aaKnown RBP23.55■■□□□ 1.36
CLIP3-206ENST00000593074 NUP98P52948 1817 aa23.55■■□□□ 1.36
CLIP3-206ENST00000593074 TAF7LQ5H9L4 462 aa23.55■■□□□ 1.36
CLIP3-206ENST00000593074 SYNE4Q8N205 404 aa23.55■■□□□ 1.36
CLIP3-206ENST00000593074 TAF6LQ9Y6J9 622 aa23.55■■□□□ 1.36
CLIP3-206ENST00000593074 CICQ96RK0 1608 aaPredicted RBP23.54■■□□□ 1.36
CLIP3-206ENST00000593074 BCL9LQ86UU0 1499 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 GOLIM4O00461 696 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 BLOC1S2Q6QNY1 142 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 GPT2Q8TD30 523 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 CCDC85AQ96PX6 553 aaPredicted RBP23.54■■□□□ 1.36
CLIP3-206ENST00000593074 SMC3Q9UQE7 1217 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 MYH3P11055 1940 aa23.54■■□□□ 1.36
CLIP3-206ENST00000593074 CHGBP05060 677 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 RPS6KB1P23443 525 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 ITPK1Q13572 414 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 ZNF34Q8IZ26 560 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 AKAP2Q9Y2D5 859 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 U3KPZ7 1027 aaPredicted RBP23.53■■□□□ 1.36
CLIP3-206ENST00000593074 IRS4O14654 1257 aaPredicted RBP23.53■■□□□ 1.36
CLIP3-206ENST00000593074 KCNQ2O43526 872 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 KRT32Q14532 448 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 FNBP4Q8N3X1 1017 aaPredicted RBP23.53■■□□□ 1.36
CLIP3-206ENST00000593074 SEC62Q99442 399 aaKnown RBP23.53■■□□□ 1.36
CLIP3-206ENST00000593074 HELLSQ9NRZ9 838 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 RIC1Q4ADV7 1423 aa23.53■■□□□ 1.36
CLIP3-206ENST00000593074 RREB1Q92766 1687 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 IFIT1P09914 478 aaKnown RBP23.52■■□□□ 1.36
CLIP3-206ENST00000593074 ST3GAL1Q11201 340 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 COL9A3Q14050 684 aaPredicted RBP23.52■■□□□ 1.36
CLIP3-206ENST00000593074 ANKRD1Q15327 319 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 ME3Q16798 604 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 CCDC129Q6ZRS4 1044 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 CCDC83Q8IWF9 413 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 TTLL11Q8NHH1 800 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 PANK2Q9BZ23 570 aa23.52■■□□□ 1.36
CLIP3-206ENST00000593074 ZNF445P59923 1031 aa23.52■■□□□ 1.35
CLIP3-206ENST00000593074 CAVIN1Q6NZI2 390 aaKnown RBP23.52■■□□□ 1.35
CLIP3-206ENST00000593074 TPCN1Q9ULQ1 816 aa23.52■■□□□ 1.35
CLIP3-206ENST00000593074 SYT1P21579 422 aa23.51■■□□□ 1.35
CLIP3-206ENST00000593074 STX6O43752 255 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 ZSCAN22P10073 491 aaPredicted RBP23.5■■□□□ 1.35
CLIP3-206ENST00000593074 CTSWP56202 376 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 ZMYM1Q5SVZ6 1142 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 PDE8AO60658 829 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 MBD3O95983 291 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 ZSCAN23Q3MJ62 389 aa23.5■■□□□ 1.35
CLIP3-206ENST00000593074 SPATA31A6Q5VVP1 1343 aa23.49■■□□□ 1.35
CLIP3-206ENST00000593074 UBN2Q6ZU65 1347 aa23.49■■□□□ 1.35
CLIP3-206ENST00000593074 LRP5O75197 1615 aa23.49■■□□□ 1.35
CLIP3-206ENST00000593074 ABCC12Q96J65 1359 aa23.49■■□□□ 1.35
CLIP3-206ENST00000593074 ANKRD18BA2A2Z9 1011 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 NCLP19338 710 aaKnown RBP23.48■■□□□ 1.35
CLIP3-206ENST00000593074 ITGA6P23229 1130 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 TOB2Q14106 344 aaPredicted RBP23.48■■□□□ 1.35
CLIP3-206ENST00000593074 XAGE2Q96GT9 111 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 GREM2Q9H772 168 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 GJB2P29033 226 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 CCDC158Q5M9N0 1113 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 DSCC1Q9BVC3 393 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 USP21Q9UK80 565 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 RIPOR2Q9Y4F9 1068 aa23.48■■□□□ 1.35
CLIP3-206ENST00000593074 LDHAL6AQ6ZMR3 332 aa23.47■■□□□ 1.35
CLIP3-206ENST00000593074 RNF113AO15541 343 aaKnown RBP23.47■■□□□ 1.35
CLIP3-206ENST00000593074 CYP21A2P08686 494 aa23.47■■□□□ 1.35
CLIP3-206ENST00000593074 ADORA1P30542 326 aa23.47■■□□□ 1.35
CLIP3-206ENST00000593074 TMEM87AQ8NBN3 555 aa23.47■■□□□ 1.35
CLIP3-206ENST00000593074 CAMTA2O94983 1202 aa23.46■■□□□ 1.35
CLIP3-206ENST00000593074 AK7Q96M32 723 aa23.46■■□□□ 1.35
CLIP3-206ENST00000593074 TTC39AQ5SRH9 613 aa23.45■■□□□ 1.35
CLIP3-206ENST00000593074 GORABQ5T7V8 394 aa23.45■■□□□ 1.35
CLIP3-206ENST00000593074 SUSD4Q5VX71 490 aa23.45■■□□□ 1.35
CLIP3-206ENST00000593074 TCEANC2Q96MN5 208 aa23.45■■□□□ 1.35
CLIP3-206ENST00000593074 NEK1Q96PY6 1258 aa23.45■■□□□ 1.35
CLIP3-206ENST00000593074 MAST3O60307 1309 aa23.45■■□□□ 1.34
CLIP3-206ENST00000593074 F13A1P00488 732 aa23.45■■□□□ 1.34
CLIP3-206ENST00000593074 PARP10Q53GL7 1025 aa23.45■■□□□ 1.34
CLIP3-206ENST00000593074 NECAB1Q8N987 351 aa23.45■■□□□ 1.34
CLIP3-206ENST00000593074 NSFL1CQ9UNZ2 370 aaKnown RBP23.45■■□□□ 1.34
CLIP3-206ENST00000593074 SLFNL1Q499Z3 407 aa23.44■■□□□ 1.34
CLIP3-206ENST00000593074 UTP14AQ9BVJ6 771 aaKnown RBP23.44■■□□□ 1.34
CLIP3-206ENST00000593074 LRRFIP1Q32MZ4 808 aaKnown RBP23.44■■□□□ 1.34
CLIP3-206ENST00000593074 METTL24Q5JXM2 366 aa23.44■■□□□ 1.34
CLIP3-206ENST00000593074 CNNM1Q9NRU3 951 aa23.44■■□□□ 1.34
CLIP3-206ENST00000593074 TMEM63CQ9P1W3 806 aa23.44■■□□□ 1.34
CLIP3-206ENST00000593074 MTMR6Q9Y217 621 aa23.44■■□□□ 1.34
CLIP3-206ENST00000593074 PDIA4P13667 645 aaKnown RBP23.43■■□□□ 1.34
CLIP3-206ENST00000593074 ATP2B3Q16720 1220 aa23.43■■□□□ 1.34
CLIP3-206ENST00000593074 VGLL2Q8N8G2 317 aa23.43■■□□□ 1.34
CLIP3-206ENST00000593074 RBM27Q9P2N5 1060 aaKnown RBP23.43■■□□□ 1.34
CLIP3-206ENST00000593074 ATP6V1DQ9Y5K8 247 aa23.43■■□□□ 1.34
CLIP3-206ENST00000593074 FKBP4Q02790 459 aaKnown RBP eCLIP23.42■■□□□ 1.34
CLIP3-206ENST00000593074 LAMA4Q16363 1823 aa23.42■■□□□ 1.34
CLIP3-206ENST00000593074 ZFYP08048 801 aaPredicted RBP23.42■■□□□ 1.34
CLIP3-206ENST00000593074 TCHHQ07283 1943 aa23.41■■□□□ 1.34
CLIP3-206ENST00000593074 HSPD1P10809 573 aaKnown RBP23.41■■□□□ 1.34
CLIP3-206ENST00000593074 SCARF1Q14162 830 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms