RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	RAD21	O60216	631 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	URI1	O94763	535 aa	Predicted RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	CEBPZ	Q03701	1054 aa	Known RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	HSP90AB2P	Q58FF8	381 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	TMC6	Q7Z403	805 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	PROM2	Q8N271	834 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	EHBP1	Q8NDI1	1231 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	NACAP1	Q9BZK3	213 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	BOLA2	Q9H3K6	86 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	HELLS	Q9NRZ9	838 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	MAP3K2	Q9Y2U5	619 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	PTPRM	P28827	1452 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	ARHGEF40	Q8TER5	1519 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	KIDINS220	Q9ULH0	1771 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	APP	P05067	770 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	AIMP1	Q12904	312 aa	Known RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	NMI	Q13287	307 aa	Predicted RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	PKP1	Q13835	747 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	ARHGAP29	Q52LW3	1261 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC102B	Q68D86	513 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	SARM1	Q6SZW1	724 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	DHX32	Q7L7V1	743 aa	Known RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	BRF1	Q92994	677 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	MPHOSPH8	Q99549	860 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	LSG1	Q9H089	658 aa	Known RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	CEP126	Q9P2H0	1117 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	TFIP11	Q9UBB9	837 aa	Known RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	PLEKHG1	Q9ULL1	1385 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	ADGRL3	Q9HAR2	1447 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	SLC27A2	O14975	620 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	SPAG1	Q07617	926 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	TSHZ3	Q63HK5	1081 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	LUZP1	Q86V48	1076 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	KCTD17	Q8N5Z5	321 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLGA1	Q92805	767 aa		4.08	□□□□□ -1.76
VMP1-216	ENST00000592790	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.08	□□□□□ -1.76
VMP1-216	ENST00000592790		A6NNZ2	444 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CAPN15	O75808	1086 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	YEATS4	O95619	227 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	TTF1	Q15361	905 aa	Predicted RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	TUBB8	Q3ZCM7	444 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	NECAB1	Q8N987	351 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	DEF6	Q9H4E7	631 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	TOMM22	Q9NS69	142 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	MYO6	Q9UM54	1294 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC9	Q9Y3X0	531 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CLTC	Q00610	1675 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	ATP10D	Q9P241	1426 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790		A0A1W2PQ27	194 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790		A0A1W2PQ64	194 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790		A0A1W2PQD8	194 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CALR	P27797	417 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	UBASH3A	P57075	661 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	PIP4K2B	P78356	416 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790		Q6ZUG5	572 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	AOPEP	Q8N6M6	819 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	NCOA7	Q8NI08	942 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	IL17RA	Q96F46	866 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	MAP3K19	Q56UN5	1328 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	KDR	P35968	1356 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	PNMA6E	A0A0J9YXQ4	647 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	SPTLC2	O15270	562 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	IFIT1	P09914	478 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	SYK	P43405	635 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	KCNJ6	P48051	423 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	RBM6	P78332	1123 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC57	Q2TAC2	916 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	G2E3	Q7L622	706 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	AMOTL1	Q8IY63	956 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CNNM3	Q8NE01	707 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CAGE1	Q8TC20	777 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	GTF3C6	Q969F1	213 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	EYA1	Q99502	592 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	USP44	Q9H0E7	712 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	SIL1	Q9H173	461 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	TRMT1	Q9NXH9	659 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CHPF2	Q9P2E5	772 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	DNAI1	Q9UI46	699 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	PALD1	Q9ULE6	856 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	ZDHHC9	Q9Y397	364 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	IGSF1	Q8N6C5	1336 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	USP42	Q9H9J4	1324 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNF213	O14771	459 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	ARHGAP6	O43182	974 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	IL15	P40933	162 aa	Predicted RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	MYL5	Q02045	173 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CKAP4	Q07065	602 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	SLC20A2	Q08357	652 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CADPS2	Q86UW7	1296 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	LRRC8A	Q8IWT6	810 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	RGS22	Q8NE09	1264 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	NOC3L	Q8WTT2	800 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	MAP4K1	Q92918	833 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	FBXW7	Q969H0	707 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	NAA15	Q9BXJ9	866 aa	Known RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	ORC3	Q9UBD5	711 aa	Predicted RBP	4.07	□□□□□ -1.76

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